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[183282_at]

Description F46C8.1 /REP_DB=WormBase Gene ID /WP=CE04576 /TR=Q9GYP2 /GB=AAF99940.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 97.3
(-2.1)
P 		126.1
(-0.5)
A 		81.9
(-3)
A 		188.6
(3)
P 		107
B 121.9
(3)
P 		104.4
(1.6)
A 		110.8
(2.1)
A 		48.6
(-3)
A 		73
C 126
(-1.7)
P 		119.9
(-2.5)
A 		116.1
(-3)
A 		161
(3)
P 		45
avr 115.1
(-0.5) 		116.8
(-0.2) 		102.9
(-3) 		132.7
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 96.6
(0.8)
P 		81.4
(0.1)
A 		63.7
(-0.7)
A 		147.2
(3)
A 		60.9
(-0.8)
A 		10.3
(-3)
A 		137
B 61.3
(-1.2)
A 		80.7
(0.2)
P 		73.4
(-0.3)
P 		88.3
(0.7)
P 		119.8
(3)
M 		36.3
(-3)
M 		84
C 84.7
(1.4)
P 		97.4
(3)
P 		77.3
(0.5)
A 		94.6
(2.7)
A 		85.6
(1.6)
A 		48.4
(-3)
A 		49
avr 80.9
(0.8) 		86.5
(1.2) 		71.5
(0) 		110
(3) 		88.8
(1.4) 		31.7
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 35.4
(3)
P 		27.4
(-0.4)
A 		21.4
(-3)
A 		27.6
(-0.3)
P 		14
B 38.9
(3)
P 		25.8
(0.3)
A 		25.7
(0.2)
A 		10.3
(-3)
A 		29
C 41.7
(3)
P 		34.5
(0)
A 		40.5
(2.5)
A 		27.2
(-3)
P 		15
avr 38.7
(3) 		29.2
(-0.4) 		29.2
(-0.4) 		21.7
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 17.8
(-0.4)
P 		29
(1.6)
A 		13.9
(-1)
A 		37.3
(3)
A 		18.4
(-0.3)
A 		2.5
(-3)
A 		35
B 21.3
(-1.7)
A 		26.9
(-0.7)
P 		17.8
(-2.3)
P 		23.4
(-1.3)
P 		48.7
(3)
M 		13.6
(-3)
M 		35
C 31.4
(3)
P 		29.7
(2.3)
P 		19.7
(-1.6)
A 		19
(-1.9)
A 		27.7
(1.5)
A 		16.2
(-3)
A 		15
avr 23.5
(0.7) 		28.5
(2.1) 		17.1
(-1.2) 		26.6
(1.6) 		31.6
(3) 		10.8
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183282_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16021
Sequence Type Exemplar sequence
Representative Public ID F46C8.1 NCBI
Target Description F46C8.1 /REP_DB=WormBase Gene ID /WP=CE04576 /TR=Q9GYP2 /GB=AAF99940.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076876(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076876 NCBI Caenorhabditis elegans F46C8.1 (F46C8.1) mRNA, complete cds. 11/11 None
F46C8.1 ENSEMBL cdna:known chromosome:CEL140:X:7550316:7551122:1 gene:F46C8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044530 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7550314-7551121(+) 98.7 100.0
Public Domain and Genome References
Gene Title
Ensembl F46C8.1
Entrez Gene 185847 Entrez gene
SwissProt Q9GYP2 EMBL-EBI
WormBase CE04576 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99940 Hypothetical protein F46C8.1 [Caenorhabditis elegans] ref|NP_509277.1| F46C8.1 [Caenorhabditis elegans] 3.0E-45
blast CAE70236 Hypothetical protein CBG16725 [Caenorhabditis briggsae] 1.0E-34
Sequence
Target Sequence 
>C. ELEGANS:183282_AT
atgactttctttttatgctgttgtggatgtttttgttgcggatgtgcctgctgcagatgg
tgcttcttccaatttccgtatggaatcacaaaactttggcgagcaattcccaatttattt
gtcaataatatggaccactttccaattcatcgattcaaggatcaagaagaaacggcgcca
gccgaggatcatgtggccaatgctagaggtattttatcgaagaagatggatgtgaagcaa
tcggatcgatgtgcttatgaaaataccggttatgtggatatcattgagatggaacgaatt
ccggagccacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACTTTCTTTTTATGCTGTTGTG 477 45 13 Antisense
GTTGTGGATGTTTTTGTTGCGGATG 373 437 32 Antisense
TTTTGTTGCGGATGTGCCTGCTGCA 194 679 43 Antisense
TGCTGCAGATGGTGCTTCTTCCAAT 95 583 61 Antisense
GTGCTTCTTCCAATTTCCGTATGGA 545 479 72 Antisense
GCGAGCAATTCCCAATTTATTTGTC 60 291 111 Antisense
ATGGACCACTTTCCAATTCATCGAT 87 53 142 Antisense
GGATCAAGAAGAAACGGCGCCAGCC 549 511 171 Antisense
GGCGCCAGCCGAGGATCATGTGGCC 241 543 186 Antisense
GGATCATGTGGCCAATGCTAGAGGT 310 511 198 Antisense
GATGGAACGAATTCCGGAGCCACCT 280 407 300 Antisense
Sequence Source Affymetrix Proprietary Database