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[183281_at]

Description C50A2.1 /REP_DB=WormBase Gene ID /WP=CE17579 /TR=O44140 /GB=AAB88321.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 93      4grp_high_8_8 > 03      6grp_highest_nonorm > 90      6grp_total > 85      4grp_total > 05      6grp_highest_sub > In      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 273
1 2 3 4 range
A 146.9
(-1.8)
P 		91.1
(-3)
P 		149.1
(-1.7)
P 		363.7
(3)
P 		273
B 197.8
(3)
P 		161.8
(-1.1)
A 		145.2
(-3)
P 		190.3
(2.1)
P 		53
C 238.2
(3)
P 		147.9
(-1.7)
P 		122.6
(-3)
P 		216.7
(1.9)
P 		116
avr 194.3
(-0) 		133.6
(-3) 		139
(-2.7) 		256.9
(3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 151.9
(-0.2)
P 		93.2
(-3)
P 		204.8
(2.3)
P 		220.3
(3)
P 		156.1
(-0)
P 		162.1
(0.3)
P 		127
B 130.6
(-2.2)
P 		134.6
(-2)
P 		117
(-3)
P 		155.5
(-0.8)
P 		223.2
(3)
P 		192.3
(1.3)
P 		106
C 148.7
(-1.1)
P 		126.2
(-2.1)
P 		107.1
(-3)
P 		160.7
(-0.6)
P 		145.5
(-1.3)
P 		240.8
(3)
P 		134
avr 143.7
(-1.1) 		118
(-3) 		143
(-1.1) 		178.8
(1.5) 		174.9
(1.2) 		198.4
(3) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 53.5
(3)
P 		19.8
(-3)
P 		39
(0.4)
P 		53.2
(2.9)
P 		34
B 63.1
(3)
P 		40
(-1.7)
A 		33.6
(-3)
P 		40.5
(-1.6)
P 		30
C 78.9
(3)
P 		42.5
(-2.2)
P 		42.7
(-2.1)
P 		36.5
(-3)
P 		42
avr 65.2
(3) 		34.1
(-3) 		38.4
(-2.2) 		43.4
(-1.2) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 28
(-3)
P 		33.1
(-1.9)
P 		44.6
(0.6)
P 		55.9
(3)
P 		47.1
(1.1)
P 		39.5
(-0.5)
P 		28
B 45.5
(-1.4)
P 		44.8
(-1.4)
P 		28.4
(-3)
P 		41.2
(-1.8)
P 		90.7
(3)
P 		71.7
(1.2)
P 		62
C 55.1
(0.1)
P 		38.5
(-1.7)
P 		27.3
(-3)
P 		32.3
(-2.4)
P 		47.1
(-0.8)
P 		80.6
(3)
P 		53
avr 42.9
(-1.1) 		38.8
(-1.9) 		33.4
(-3) 		43.1
(-1.1) 		61.6
(2.5) 		63.9
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183281_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10990
Sequence Type Exemplar sequence
Representative Public ID C50A2.1 NCBI
Target Description C50A2.1 /REP_DB=WormBase Gene ID /WP=CE17579 /TR=O44140 /GB=AAB88321.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067648(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067648 NCBI Caenorhabditis elegans Y104H12D.2 (Y104H12D.2) mRNA, complete cds. 11/11 None
SNAP00000032194 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1178039:1182790:1 11/11 None
GENEFINDER00000032198 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1178039:1181709:1 11/11 None
Y104H12D.2 ENSEMBL cdna:known chromosome:CEL140:IV:1178022:1182837:1 gene:Y104H12D.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1178044-1178855(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y104H12D.2
Entrez Gene 3564762 Entrez gene
SwissProt Q9N5A2 EMBL-EBI
WormBase CE31631 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM97962 Hypothetical protein Y104H12D.2 [Caenorhabditis elegans] ref|NP_500049.2| Y104H12D.2 [Caenorhabditis elegans] 1.0E-175
blast AAM97962 Hypothetical protein Y104H12D.2 [Caenorhabditis elegans] ref|NP_500049.2| Y104H12D.2 [Caenorhabditis elegans] 1.0E-149
blast T32508 hypothetical protein C50A2.1 - Caenorhabditis elegans 6.0E-89
blast T32508 hypothetical protein C50A2.1 - Caenorhabditis elegans 7.0E-89
blast CAE69233 Hypothetical protein CBG15275 [Caenorhabditis briggsae] 3.0E-42
blast CAE69233 Hypothetical protein CBG15275 [Caenorhabditis briggsae] 4.0E-42
Sequence
Target Sequence 
>C. ELEGANS:183281_AT
cgccaccaccagtcttggaaacgtatttataccgattgcagcggccagaaccaagaacga
gacgcttttaagcttgctcgacaagttttcatacaacgaaactgtgcaaatggtggttat
taaacagataggacgcaaaaataactgcaattatcaggcaaaactcgtgaaaaagctcga
aggctcaatgttggcggccgccagaatttccaatgaagttttcgggccattgatcgccca
ggtgaccagcaccacggatagctacgcgtttgctcaaaacgacgaaaaaggcacaatttt
cgtgccgggagacgcttttgacgcgaaaatcgtgaaaaatgtgggccgatacgtgaatac
cagcaatcaactggtgctaaaaatcaaggagcaaatcgaacgaaaagggtgtaaatgggt
cgctgttgaggctgtaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCACCACCAGTCTTGGAAACGTA 425 257 72 Antisense
ATACCGATTGCAGCGGCCAGAACCA 377 21 100 Antisense
GAGACGCTTTTAAGCTTGCTCGACA 676 393 130 Antisense
TCGAAGGCTCAATGTTGGCGGCCGC 145 601 248 Antisense
CGGCCGCCAGAATTTCCAATGAAGT 41 243 266 Antisense
TTCGGGCCATTGATCGCCCAGGTGA 583 679 292 Antisense
TGACCAGCACCACGGATAGCTACGC 328 569 314 Antisense
GGATAGCTACGCGTTTGCTCAAAAC 352 511 327 Antisense
TTTTCGTGCCGGGAGACGCTTTTGA 100 677 368 Antisense
GGGCCGATACGTGAATACCAGCAAT 76 493 414 Antisense
AATGGGTCGCTGTTGAGGCTGTAAA 467 163 485 Antisense
Sequence Source Affymetrix Proprietary Database