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[183277_at]

Description ZK697.3 /REP_DB=WormBase Gene ID /WP=CE15399 /TR=O44575 /GB=AAC48246.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 26.6
(-1.8)
A 		14
(-3)
A 		22
(-2.3)
A 		78.4
(3)
A 		64
B 38.7
(-0.5)
M 		18
(-2.7)
A 		14.6
(-3)
A 		73.6
(3)
A 		59
C 12.7
(-2)
A 		14
(-1.8)
A 		1.5
(-3)
A 		65.9
(3)
P 		64
avr 26
(-1.7) 		15.3
(-2.7) 		12.7
(-3) 		72.6
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 1.4
(-3)
A 		14.5
(-1.5)
A 		52.7
(3)
P 		13.2
(-1.6)
A 		14.7
(-1.4)
A 		25.8
(-0.1)
A 		51
B 26.8
(3)
A 		14.5
(0.2)
A 		18.8
(1.2)
A 		25.2
(2.6)
A 		25.7
(2.7)
P 		0.6
(-3)
A 		26
C 16.4
(-2.5)
A 		72.2
(3)
M 		22.8
(-1.8)
A 		23
(-1.8)
A 		11
(-3)
A 		19.4
(-2.2)
A 		61
avr 14.9
(-3) 		33.7
(3) 		31.4
(2.3) 		20.5
(-1.2) 		17.1
(-2.3) 		15.3
(-2.9) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.7
(1.7)
A 		3
(-3)
A 		5.7
(-1.1)
A 		11.5
(3)
A 		9
B 12.4
(1.4)
M 		4.4
(-2.5)
A 		3.4
(-3)
A 		15.7
(3)
A 		12
C 4.2
(-0.9)
A 		4
(-1)
A 		0.5
(-3)
A 		11.1
(3)
P 		11
avr 8.8
(0.5) 		3.8
(-2.6) 		3.2
(-3) 		12.8
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 0.3
(-3)
A 		5.2
(-0.4)
A 		11.5
(3)
P 		3.4
(-1.3)
A 		4.4
(-0.8)
A 		6.3
(0.2)
A 		11
B 9.3
(2.4)
A 		4.8
(-0.3)
A 		4.6
(-0.4)
A 		6.7
(0.8)
A 		10.4
(3)
P 		0.2
(-3)
A 		10
C 6.1
(-2.2)
A 		22
(3)
M 		5.8
(-2.3)
A 		4.6
(-2.7)
A 		3.6
(-3)
A 		6.5
(-2.1)
A 		18
avr 5.2
(-2.2) 		10.7
(3) 		7.3
(-0.2) 		4.9
(-2.4) 		6.1
(-1.3) 		4.3
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183277_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15944
Sequence Type Exemplar sequence
Representative Public ID ZK697.3 NCBI
Target Description ZK697.3 /REP_DB=WormBase Gene ID /WP=CE15399 /TR=O44575 /GB=AAC48246.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071090(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071090 NCBI Caenorhabditis elegans ZK697.3 (ZK697.3) mRNA, complete cds. 11/11 None
ZK697.3 ENSEMBL cdna:known chromosome:CEL140:V:1728945:1730478:1 gene:ZK697.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036772 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1728944-1730478(+) 86.69 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK697.3
Entrez Gene 191410 Entrez gene
SwissProt O44575 EMBL-EBI
WormBase CE15399 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48246 Hypothetical protein ZK697.3 [Caenorhabditis elegans] ref|NP_503491.1| ZK697.3 [Caenorhabditis elegans] 1.0E-150
blast CAE56997 Hypothetical protein CBG24864 [Caenorhabditis briggsae] 4.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503491.1 7 20-39,52-74,84-103,146-168,199-218,238-260,275-294
ZK697.3 7 20-39,52-74,84-103,146-168,199-218,238-260,275-294
Sequence
Target Sequence 
>C. ELEGANS:183277_AT
tcaattttcttgaacctgaagccaaaagcaagcaaatttgtgttgggggtcaaaattaca
agtcaaaagtgacaattactcagtttttgccactcataattttggaaaaaattaaaaaac
aaatgttttcctgcattttttcttctgtaattttgttctatttaactaaagttttgatat
ttgttactgcattcatgtcgtttttctaccgtttacgtaattccacaggatcgaaacatt
ttattatcactattcatctttgtaaaggaaatattgttgagctcgatatgatgaagtttt
tgccaattttaataataacctttttttggttgaagaaaattttattttttttattatcaa
aaggtttaaaatctagagaaaaagctacacaagttgaatatgtgcaaatggttcatatag
ccttatacatacttgtgttctggttgataaatcttccgcaaattgcgcattcaattacga
gctctgagccatattctccacgtttactaggatttttggacagctgcattttacaatatg
tttttgtttatgcgatgattatatcagaatgggaaattgtgtttgactgctttcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATTTTCTTGAACCTGAAGCCAA 284 633 311 Antisense
AATGTTTTCCTGCATTTTTTCTTCT 580 161 432 Antisense
GATATTTGTTACTGCATTCATGTCG 285 427 486 Antisense
GCATTCATGTCGTTTTTCTACCGTT 71 309 499 Antisense
TACCGTTTACGTAATTCCACAGGAT 120 649 517 Antisense
TAGCCTTATACATACTTGTGTTCTG 672 651 728 Antisense
GTTCTGGTTGATAAATCTTCCGCAA 397 443 747 Antisense
GCGCATTCAATTACGAGCTCTGAGC 13 289 775 Antisense
TCTGAGCCATATTCTCCACGTTTAC 342 609 793 Antisense
TAGGATTTTTGGACAGCTGCATTTT 315 655 818 Antisense
GGAAATTGTGTTTGACTGCTTTCGT 451 527 882 Antisense
Sequence Source Affymetrix Proprietary Database