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[183276_at]

Description F10E7.6 /REP_DB=WormBase Gene ID /WP=CE04361 /TR=Q19303 /GB=AAA82425.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 65      6grp_total > 51      4grp_total > 49      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 706
1 2 3 4 range
A 907.7
(-3)
P 		1614.1
(3)
P 		1464.6
(1.7)
P 		984.3
(-2.3)
P 		706
B 976.7
(-3)
P 		1526.5
(2.3)
P 		1594.8
(3)
P 		1211.5
(-0.7)
P 		618
C 946.2
(-3)
P 		1398.8
(1.6)
P 		1540.5
(3)
P 		1028.9
(-2.2)
P 		594
avr 943.5
(-3) 		1513.1
(2.8) 		1533.3
(3) 		1074.9
(-1.7) 		590

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 734
1 2 3 4 5 6 range
A 1009.4
(-1.6)
P 		1178.3
(1.4)
P 		1170.8
(1.3)
P 		1264.2
(3)
P 		935.2
(-3)
P 		1000.2
(-1.8)
P 		329
B 843
(-3)
P 		1203.2
(-0.1)
P 		1577.1
(3)
P 		1160.1
(-0.4)
P 		983.4
(-1.9)
P 		861.4
(-2.8)
P 		734
C 1091.1
(-1.4)
P 		1149.3
(-0.6)
P 		1390.5
(2.4)
P 		1433.9
(3)
P 		961.8
(-3)
P 		1082.7
(-1.5)
P 		472
avr 981.2
(-2.7) 		1176.9
(0.1) 		1379.5
(3) 		1286.1
(1.7) 		960.1
(-3) 		981.4
(-2.7) 		419
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 393
1 2 3 4 range
A 330.5
(1.7)
P 		350.4
(2.2)
P 		382.9
(3)
P 		144.1
(-3)
P 		239
B 311.5
(-0.3)
P 		377
(3)
P 		369.6
(2.6)
P 		258.2
(-3)
P 		119
C 313.2
(-0.7)
P 		402.2
(0.8)
P 		536.9
(3)
P 		173.5
(-3)
P 		363
avr 318.4
(0.2) 		376.5
(1.7) 		429.8
(3) 		191.9
(-3) 		238

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 186.1
(-3)
P 		419.1
(3)
P 		255
(-1.2)
P 		320.6
(0.5)
P 		282.2
(-0.5)
P 		243.5
(-1.5)
P 		233
B 293.3
(-3)
P 		400.5
(3)
P 		383
(2)
P 		307.3
(-2.2)
P 		399.5
(2.9)
P 		321.2
(-1.4)
P 		107
C 404.4
(3)
P 		350.7
(0.2)
P 		353.9
(0.4)
P 		288.4
(-3)
P 		311.2
(-1.8)
P 		362.4
(0.8)
P 		116
avr 294.6
(-3) 		390.1
(3) 		330.6
(-0.7) 		305.4
(-2.3) 		331
(-0.7) 		309
(-2.1) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183276_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4811
Sequence Type Exemplar sequence
Representative Public ID F10E7.6 NCBI
Target Description F10E7.6 /REP_DB=WormBase Gene ID /WP=CE04361 /TR=Q19303 /GB=AAA82425.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063070(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063070 NCBI Caenorhabditis elegans F10E7.6 (F10E7.6) mRNA, complete cds. 11/11 None
SNAP00000000729 ENSEMBL cdna:SNAP chromosome:CEL140:II:7113014:7113522:1 11/11 None
GENEFINDER00000000738 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7113014:7113522:1 11/11 None
F10E7.6 ENSEMBL cdna:known chromosome:CEL140:II:7113014:7113522:1 gene:F10E7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7113009-7113518(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10E7.6
Entrez Gene 184301 Entrez gene
SwissProt Q19303 EMBL-EBI
WormBase CE04361 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82425 Hypothetical protein F10E7.6 [Caenorhabditis elegans] ref|NP_495471.1| F10E7.6 [Caenorhabditis elegans] 1.0E-81
blast CAE67544 Hypothetical protein CBG13069 [Caenorhabditis briggsae] 2.0E-64
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495471.1 1 61-78
F10E7.6 1 61-78
SNAP00000000729 1 61-78
GENEFINDER00000000738 1 61-78
Sequence
Target Sequence 
>C. ELEGANS:183276_AT
tggagggttttgttatctcgttcctcaatattagctcaagccagaggattggcaaccaag
agaaacgcacctgaaccgaagtttacacaaagtgccgcatttcaaggtcgtggatctcga
ggaatgccacaattcaagccagattactactcatcagacgcgtatgccaacaaaaaagtg
ctatcagctatcggaagtcttatagcaattgtaatctatttcggttggctcagagaacca
tcagatttggacgaaatatggagcgctccaccacacattttgacctccaatttggagaga
aaaatgcttcgagaacaaattaagcaagctcaagagaagggaatggatacagcgcttcta
cgagcacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGGGTTTTGTTATCTCGTTCCT 682 547 16 Antisense
ATCTCGTTCCTCAATATTAGCTCAA 403 33 30 Antisense
ACGCACCTGAACCGAAGTTTACACA 129 91 80 Antisense
AGTGCCGCATTTCAAGGTCGTGGAT 433 57 106 Antisense
AATGCCACAATTCAAGCCAGATTAC 428 165 138 Antisense
ACTACTCATCAGACGCGTATGCCAA 226 99 161 Antisense
AGTGCTATCAGCTATCGGAAGTCTT 98 61 192 Antisense
TTGTAATCTATTTCGGTTGGCTCAG 605 691 224 Antisense
AAATATGGAGCGCTCCACCACACAT 394 115 269 Antisense
CACCACACATTTTGACCTCCAATTT 32 203 284 Antisense
GATACAGCGCTTCTACGAGCACAAT 597 423 361 Antisense
Sequence Source Affymetrix Proprietary Database