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[183275_at]

Description F02C9.4 /REP_DB=WormBase Gene ID /WP=CE09176 /TR=P91205 /GB=AAB37358.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 66.6
(-2.6)
A 		71.4
(-2.1)
A 		62
(-3)
A 		126.8
(3)
A 		65
B 53.9
(2.8)
A 		16.3
(-3)
A 		54.9
(3)
A 		36.3
(0.1)
A 		39
C 9.9
(-3)
A 		14
(-2.8)
A 		45.9
(-1)
A 		115.5
(3)
A 		106
avr 43.5
(-2) 		33.9
(-3) 		54.3
(-0.9) 		92.9
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 88.3
(-1.2)
A 		39.8
(-2.6)
A 		27.2
(-3)
A 		105.4
(-0.7)
A 		201.9
(2.1)
A 		233.5
(3)
A 		206
B 8.8
(-3)
A 		10.2
(-3)
A 		59.4
(-1.5)
A 		65
(-1.3)
A 		193.6
(2.5)
A 		210.5
(3)
A 		202
C 27.9
(-3)
A 		70.5
(-1.7)
A 		40
(-2.6)
A 		72.5
(-1.6)
A 		210.3
(2.8)
A 		217.8
(3)
A 		190
avr 41.7
(-3) 		40.2
(-3) 		42.2
(-2.9) 		81
(-1.6) 		201.9
(2.4) 		220.6
(3) 		180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 24.3
(3)
A 		15.5
(-3)
A 		16.2
(-2.5)
A 		18.6
(-0.9)
A 		9
B 17.2
(3)
A 		4
(-3)
A 		12.7
(1)
A 		7.7
(-1.3)
A 		13
C 3.3
(-3)
A 		4
(-2.7)
A 		16
(1.7)
A 		19.5
(3)
A 		16
avr 14.9
(2.7) 		7.8
(-3) 		15
(2.8) 		15.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 16.3
(-1.9)
A 		14.2
(-2.1)
A 		5.9
(-3)
A 		26.7
(-0.7)
A 		60.9
(3)
A 		56.9
(2.6)
A 		55
B 3.1
(-3)
A 		3.4
(-3)
A 		14.4
(-2.1)
A 		17.2
(-1.9)
A 		78.7
(3)
A 		78.5
(3)
A 		76
C 10.4
(-3)
A 		21.5
(-1.9)
A 		10.2
(-3)
A 		14.6
(-2.6)
A 		68.1
(2.5)
A 		72.9
(3)
A 		63
avr 9.9
(-3) 		13
(-2.7) 		10.2
(-3) 		19.5
(-2) 		69.2
(3) 		69.4
(3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183275_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15899
Sequence Type Exemplar sequence
Representative Public ID F02C9.4 NCBI
Target Description F02C9.4 /REP_DB=WormBase Gene ID /WP=CE09176 /TR=P91205 /GB=AAB37358.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071459(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071459 NCBI Caenorhabditis elegans F02C9.4 (F02C9.4) mRNA, complete cds. 11/11 None
SNAP00000040785 ENSEMBL cdna:SNAP chromosome:CEL140:V:3137323:3138358:-1 11/11 None
GENEFINDER00000040787 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3137323:3138037:-1 11/11 None
F02C9.4 ENSEMBL cdna:known chromosome:CEL140:V:3137323:3138037:-1 gene:F02C9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3137322-3138037(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02C9.4
Entrez Gene 184075 Entrez gene
SwissProt P91205 EMBL-EBI
WormBase CE09176 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37358 Hypothetical protein F02C9.4 [Caenorhabditis elegans] ref|NP_503860.1| F02C9.4 [Caenorhabditis elegans] 1.0E-115
blast CAE62227 Hypothetical protein CBG06279 [Caenorhabditis briggsae] 3.0E-64
blast CAE62227 Hypothetical protein CBG06279 [Caenorhabditis briggsae] 1.0E-62
blast AAY86273 Hypothetical protein D2063.4 [Caenorhabditis elegans] 1.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 5.9E-10
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 5.9E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503860.1 1 171-193
F02C9.4 1 171-193
SNAP00000040785 1 180-202
GENEFINDER00000040787 1 171-193
Sequence
Target Sequence 
>C. ELEGANS:183275_AT
tgcggacaccgtgtgccacggatacgaattaagtgtacacaacgatattgacgtcggatt
gttgactgaaaaaccatgcactcatgtccacggagacattgtcatcgagaacttgaatgg
tggaaagcgaatgtcaacttattggaatattcaagaactccatggatctctgaccatcaa
gaacaccaagaacttgggagattctgtgaatcttcaaaatctgaaagtgatccaggcgga
gaacaagccggctattgtgctgatgaataatgttgggttgaagttggcgatcggtgcacg
tcttggtgatgtttcaactcgtcatccgatcatgtactatttcaaagaaaactctccagc
cgccatgacagaaagtcaacaccacatcttgtaccatgcatcccgcagtcttcgtccgat
attctacactgataatcatttcatcaccaagccctgcaatgagagtacctacagattttg
gatctttgtgtttggaaccttcagtactgcaattaccattgtgctcattggctactcgtt
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGGACACCGTGTGCCACGGATAC 13 557 48 Antisense
AAAACCATGCACTCATGTCCACGGA 279 131 117 Antisense
GAACTCCATGGATCTCTGACCATCA 351 349 202 Antisense
GATCGGTGCACGTCTTGGTGATGTT 228 419 336 Antisense
GTTTCAACTCGTCATCCGATCATGT 382 449 358 Antisense
TCAACACCACATCTTGTACCATGCA 597 629 423 Antisense
GCAGTCTTCGTCCGATATTCTACAC 146 313 452 Antisense
GATAATCATTTCATCACCAAGCCCT 135 423 478 Antisense
CAAGCCCTGCAATGAGAGTACCTAC 66 187 495 Antisense
GTGTTTGGAACCTTCAGTACTGCAA 549 483 535 Antisense
CATTGTGCTCATTGGCTACTCGTTT 409 217 564 Antisense
Sequence Source Affymetrix Proprietary Database