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[183274_at]

Description F28C6.10 /REP_DB=WormBase Gene ID /WP=CE09747 /TR=Q93621 /GB=CAA92676.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 09      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 3
(-3)
A 		3
(-3)
A 		11
(-2.2)
A 		62.1
(3)
A 		59
B 4.9
(-1.2)
A 		9.1
(3)
A 		4.7
(-1.4)
A 		3.1
(-3)
A 		6
C 3.7
(-3)
A 		9.4
(3)
A 		8.5
(2.1)
A 		9.1
(2.7)
A 		6
avr 3.9
(-3) 		7.2
(-2.1) 		8.1
(-1.8) 		24.8
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 5.9
(-2)
A 		4.3
(-2.4)
A 		1.9
(-3)
A 		8.2
(-1.4)
A 		6.8
(-1.7)
A 		25.3
(3)
A 		23
B 2.5
(-3)
A 		5.2
(-2.2)
A 		5.9
(-2)
A 		4.7
(-2.3)
A 		22
(3)
A 		2.8
(-2.9)
A 		20
C 3.5
(-3)
A 		8.5
(-0.1)
A 		7.7
(-0.6)
A 		13.8
(3)
A 		3.7
(-2.9)
A 		7.2
(-0.8)
A 		10
avr 4
(-3) 		6
(-1.5) 		5.2
(-2.1) 		8.9
(0.8) 		10.8
(2.2) 		11.8
(3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.1
(-2.7)
A 		0.7
(-3)
A 		2.9
(-1.4)
A 		9.1
(3)
A 		8
B 1.5
(0.2)
A 		2.2
(3)
A 		1.1
(-1.4)
A 		0.7
(-3)
A 		2
C 1.2
(-3)
A 		2.7
(2)
A 		3
(3)
A 		1.5
(-2)
A 		2
avr 1.3
(-3) 		1.9
(-1.6) 		2.3
(-0.6) 		3.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.1
(-2.3)
A 		1.5
(-1.9)
A 		0.4
(-3)
A 		2.1
(-1.2)
A 		2.1
(-1.2)
A 		6.2
(3)
A 		6
B 0.9
(-3)
A 		1.7
(-2.4)
A 		1.4
(-2.6)
A 		1.2
(-2.8)
A 		8.9
(3)
A 		1.1
(-2.9)
A 		8
C 1.3
(-2.6)
A 		2.6
(2.3)
A 		2
(0)
A 		2.8
(3)
A 		1.2
(-3)
A 		2.4
(1.5)
A 		2
avr 1.1
(-3) 		1.9
(-1.4) 		1.3
(-2.6) 		2
(-1.2) 		4.1
(3) 		3.2
(1.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183274_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3371
Sequence Type Exemplar sequence
Representative Public ID F28C6.10 NCBI
Target Description F28C6.10 /REP_DB=WormBase Gene ID /WP=CE09747 /TR=Q93621 /GB=CAA92676.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063426(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063426 NCBI Caenorhabditis elegans F28C6.10 (F28C6.10) mRNA, complete cds. 11/11 None
GENEFINDER00000038102 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8607923:8608708:1 11/11 None
F28C6.10 ENSEMBL cdna:known chromosome:CEL140:II:8607920:8608726:1 gene:F28C6.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038097 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8607919-8608705(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28C6.10
Entrez Gene 174382 Entrez gene
SwissProt Q93621 EMBL-EBI
WormBase CE09747 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92676 Hypothetical protein F28C6.10 [Caenorhabditis elegans] ref|NP_495827.1| F28C6.10 [Caenorhabditis elegans] 5.0E-76
blast CAE57566 Hypothetical protein CBG00544 [Caenorhabditis briggsae] 5.0E-27
Sequence
Target Sequence 
>C. ELEGANS:183274_AT
ccgtggattcatttttacagtcattatgggcctcctgttggccgtgagtacggtaacatg
cgccgatgctgttgaaactgaaggatctattgtttctggatctgaggatgtcaaggtgtc
tcttgaatccaaatctactgtagctccaacatcttccgttactcaaaaatcctcaaattc
aactgaatccccagaaactgattcaacggaaaagggagatgatgaaaagccgatcactga
acaaattcgtacttatattgaggattctgtcaaatcagttaaacatgcgatttccaaaat
tggaaaattcgtcggagagttgtttgaaccatccaattcaactgttccttcaaatcgttc
gact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGTGGATTCATTTTTACAGTCATT 611 265 24 Antisense
CAGTCATTATGGGCCTCCTGTTGGC 689 207 41 Antisense
GCCGTGAGTACGGTAACATGCGCCG 73 285 64 Antisense
ACATGCGCCGATGCTGTTGAAACTG 441 105 79 Antisense
AGGTGTCTCTTGAATCCAAATCTAC 46 59 137 Antisense
CCAAATCTACTGTAGCTCCAACATC 161 275 152 Antisense
ACATCTTCCGTTACTCAAAAATCCT 452 105 172 Antisense
AATTCAACTGAATCCCCAGAAACTG 675 175 199 Antisense
GTCGGAGAGTTGTTTGAACCATCCA 708 471 334 Antisense
AACCATCCAATTCAACTGTTCCTTC 639 147 350 Antisense
AACTGTTCCTTCAAATCGTTCGACT 192 143 363 Antisense
Sequence Source Affymetrix Proprietary Database