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[183273_at]

Description C14C6.3 /REP_DB=WormBase Gene ID /WP=CE08158 /TR=O44669 /GB=AAB94261.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 24      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 45.1
(-3)
A 		101.8
(2.5)
A 		92.9
(1.7)
A 		106.4
(3)
A 		61
B 15.6
(-3)
A 		74.7
(1.8)
A 		89.6
(3)
A 		44.6
(-0.6)
A 		74
C 70.5
(-1.8)
A 		54.4
(-3)
A 		62.9
(-2.4)
A 		136.1
(3)
A 		82
avr 43.7
(-3) 		77
(0.8) 		81.8
(1.4) 		95.7
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 79.4
(3)
A 		43.6
(-0.2)
A 		78.8
(2.9)
A 		31.7
(-1.3)
A 		13.3
(-3)
A 		55.8
(0.9)
A 		66
B 35.5
(-3)
A 		48.3
(-1.3)
A 		79.6
(3)
A 		43.7
(-1.9)
A 		43.5
(-1.9)
A 		49.1
(-1.1)
A 		44
C 51.7
(2.5)
A 		55.8
(3)
A 		9.1
(-3)
A 		13.4
(-2.4)
A 		46.1
(1.8)
A 		47.8
(2)
A 		47
avr 55.5
(2.9) 		49.2
(1.5) 		55.8
(3) 		29.6
(-3) 		34.3
(-1.9) 		50.9
(1.9) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 16.4
(-2.4)
A 		22.1
(1.5)
A 		24.3
(3)
A 		15.6
(-3)
A 		9
B 5
(-3)
A 		18.5
(2.1)
A 		20.8
(3)
A 		9.5
(-1.3)
A 		16
C 23.3
(3)
A 		15.6
(-3)
A 		21.9
(1.9)
A 		22.9
(2.7)
A 		8
avr 14.9
(-3) 		18.7
(0.1) 		22.3
(3) 		16
(-2.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 14.6
(1.8)
A 		15.5
(2.2)
A 		17.2
(3)
A 		8
(-1.2)
A 		4
(-3)
A 		13.6
(1.4)
A 		13
B 12.3
(-2.5)
A 		16.1
(0.5)
A 		19.3
(3)
A 		11.6
(-3)
A 		17.7
(1.8)
A 		18.3
(2.2)
A 		8
C 19.2
(3)
A 		17
(2.2)
A 		2.3
(-3)
A 		2.7
(-2.9)
A 		14.9
(1.5)
A 		16
(1.9)
A 		17
avr 15.4
(2.5) 		16.2
(3) 		12.9
(0.8) 		7.4
(-3) 		12.2
(0.3) 		16
(2.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183273_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15890
Sequence Type Exemplar sequence
Representative Public ID C14C6.3 NCBI
Target Description C14C6.3 /REP_DB=WormBase Gene ID /WP=CE08158 /TR=O44669 /GB=AAB94261.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070839(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070839 NCBI Caenorhabditis elegans C14C6.3 (C14C6.3) mRNA, complete cds. 11/11 None
SNAP00000017693 ENSEMBL cdna:SNAP chromosome:CEL140:V:543298:548056:1 11/11 None
GENEFINDER00000017704 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:543502:545188:1 11/11 None
C14C6.3 ENSEMBL cdna:known chromosome:CEL140:V:543298:545188:1 gene:C14C6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:543297-545188(+) 93.55 100.0
Public Domain and Genome References
Gene Title
Ensembl C14C6.3
Entrez Gene 182601 Entrez gene
SwissProt O44669 EMBL-EBI
WormBase CE35237 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8107 galactoside 2-alpha-L-fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94261 Hypothetical protein C14C6.3 [Caenorhabditis elegans] ref|NP_503240.2| C14C6.3 [Caenorhabditis elegans] 0.0
blast AAB94261 Hypothetical protein C14C6.3 [Caenorhabditis elegans] ref|NP_503240.2| C14C6.3 [Caenorhabditis elegans] 1.0E-175
blast AAB70365 Hypothetical protein K06H6.6 [Caenorhabditis elegans] ref|NP_503253.1| K06H6.6 [Caenorhabditis elegans] 1.0E-117
blast AAB70365 Hypothetical protein K06H6.6 [Caenorhabditis elegans] ref|NP_503253.1| K06H6.6 [Caenorhabditis elegans] 1.0E-114
blast AAB70365 Hypothetical protein K06H6.6 [Caenorhabditis elegans] ref|NP_503253.1| K06H6.6 [Caenorhabditis elegans] 1.0E-113
blast CAB01447 Hypothetical protein W07G4.2 [Caenorhabditis elegans] ref|NP_506258.1| W07G4.2 [Caenorhabditis elegans] 1.0E-101
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503240.2 1 7-26
C14C6.3 1 7-26
SNAP00000017693 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:183273_AT
gacggactattctatcaagcctggaaatattttccatcaatgcgtgacgagctctccggc
tacttgaaaaaatcgaagaaaaactactggcttcccaaacctgacaatgatacatttgta
acatgcgctcatgtgcgtaggagtgattttacatcgaatggattcgcagcgtccgagtca
acttttgtaagaagtgctcttgattttattcaagacaaagaaaatggtgaaaaactcaaa
aataccattgtcctattcggtgatgatccgaagtttatgcgaaacattttcaacaatact
tccctgtcggatcagcaagacagtcagattttaaacactacctatttcgtatcacaaaac
tcaccgtctgatgacttagtctacgcaaaagatgtatgtgatgtcgtgttgatcagtgct
ccccactcaacatttggctggtggattgggtatttttcgaaaggggacaaagtatattat
atggacattcgagaaacaaatgattgggtttatagagttggagagctgaacccatacgac
tacttcatgccacattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGACTATTCTATCAAGCCTGGA 200 377 517 Antisense
TCCATCAATGCGTGACGAGCTCTCC 606 587 549 Antisense
CGAGCTCTCCGGCTACTTGAAAAAA 296 247 564 Antisense
GGCTTCCCAAACCTGACAATGATAC 597 537 605 Antisense
GAATGGATTCGCAGCGTCCGAGTCA 268 331 672 Antisense
ATACCATTGTCCTATTCGGTGATGA 157 23 758 Antisense
AATACTTCCCTGTCGGATCAGCAAG 670 171 811 Antisense
AAACACTACCTATTTCGTATCACAA 384 129 849 Antisense
AACTCACCGTCTGATGACTTAGTCT 358 139 874 Antisense
TGATGTCGTGTTGATCAGTGCTCCC 365 567 915 Antisense
CATACGACTACTTCATGCCACATTG 176 215 1049 Antisense
Sequence Source Affymetrix Proprietary Database