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[183272_at]

Description C03H5.6 /REP_DB=WormBase Gene ID /WP=CE07899 /TR=O16659 /GB=AAB66129.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 52      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 249.1
(3)
A 		212.5
(1.6)
A 		217.1
(1.8)
A 		92.8
(-3)
A 		156
B 251.3
(1.7)
A 		296.4
(3)
A 		251.1
(1.7)
A 		87.5
(-3)
A 		209
C 256.1
(2.1)
A 		279.1
(3)
A 		195.6
(-0.3)
A 		126.3
(-3)
A 		153
avr 252.2
(2.6) 		262.7
(3) 		221.3
(1.5) 		102.2
(-3) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 275.6
(3)
A 		163.1
(-0.2)
A 		212.1
(1.2)
A 		161
(-0.2)
A 		190.8
(0.6)
A 		63.1
(-3)
A 		213
B 174.2
(0)
A 		233.1
(1.8)
A 		209.5
(1.1)
A 		274.9
(3)
A 		154.6
(-0.5)
A 		70.4
(-3)
A 		205
C 214.4
(0.8)
A 		277.6
(3)
A 		179.9
(-0.4)
A 		223.1
(1.1)
A 		149.7
(-1.4)
A 		103
(-3)
A 		175
avr 221.4
(2.9) 		224.6
(3) 		200.5
(2) 		219.7
(2.8) 		165
(0.5) 		78.8
(-3) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 90.7
(3)
A 		46.1
(-0.5)
A 		56.7
(0.4)
A 		13.6
(-3)
A 		77
B 80.1
(3)
A 		73.2
(2.3)
A 		58.2
(0.9)
A 		18.6
(-3)
A 		62
C 84.8
(3)
A 		80.3
(2.6)
A 		68.2
(1.4)
A 		21.3
(-3)
A 		64
avr 85.2
(3) 		66.5
(1.3) 		61
(0.8) 		17.8
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 50.8
(2)
A 		58
(3)
A 		46.2
(1.3)
A 		40.8
(0.6)
A 		57.6
(2.9)
A 		15.4
(-3)
A 		43
B 60.6
(1)
A 		77.6
(3)
A 		50.9
(-0.1)
A 		72.8
(2.4)
A 		62.8
(1.3)
A 		26.2
(-3)
A 		51
C 79.5
(2.4)
A 		84.7
(3)
A 		45.8
(-1.6)
A 		44.9
(-1.8)
A 		48.5
(-1.3)
A 		34.5
(-3)
A 		50
avr 63.6
(1.8) 		73.4
(3) 		47.6
(-0.2) 		52.8
(0.4) 		56.3
(0.9) 		25.4
(-3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183272_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4554
Sequence Type Exemplar sequence
Representative Public ID C03H5.6 NCBI
Target Description C03H5.6 /REP_DB=WormBase Gene ID /WP=CE07899 /TR=O16659 /GB=AAB66129.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061323(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061323 NCBI Caenorhabditis elegans C03H5.6 (C03H5.6) mRNA, complete cds. 11/11 None
C03H5.6 ENSEMBL cdna:known chromosome:CEL140:II:392813:399975:-1 gene:C03H5.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020969 5/11 Cross Hyb Matching Probes None
GENEFINDER00000020977 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:392812-399975(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03H5.6
Entrez Gene 182183 Entrez gene
SwissProt O16659 EMBL-EBI
WormBase CE07899 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66129 Hypothetical protein C03H5.6 [Caenorhabditis elegans] ref|NP_493724.1| C03H5.6 [Caenorhabditis elegans] 0.0
blast CAE62895 Hypothetical protein CBG07083 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 9.4E-7
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.6E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493724.1 1 472-494
C03H5.6 1 472-494
Sequence
Target Sequence 
>C. ELEGANS:183272_AT
atcactgctcccgatgcaaagtcacgaatacctgcggagctgtaacatggatgtgcccat
cgtgtaaaacatattcatccgacacaacactcatgaaaaaccccaacaatgtcacgacag
gtacgactacagtaacccagggttacggtagtggtactgcttggaaaaatcttattttca
ccaaccagaccagtcaaaccaaccataccaagattgttaccatgaccagcattccaaaag
cgtttaatatcagaagaacgcaaaactttgatttcgaaaacaaaatcgaacgatttcgtt
ttttctcagatccaaacaaaatcgatagcgaaccgggaactgaattctcaattaagctca
ctcaattgggattgacaataaataactttttcacggaaaaatctgaaggtttcttaatta
ttatcgataattcgacgtcaacttttggtatttttgttttttttttgcttttcccatttc
tcagccttcataatcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACTGCTCCCGATGCAAAGTCAC 115 29 986 Antisense
AAGTCACGAATACCTGCGGAGCTGT 654 157 1004 Antisense
GTAACATGGATGTGCCCATCGTGTA 11 463 1027 Antisense
CATATTCATCCGACACAACACTCAT 257 215 1055 Antisense
AAAACCCCAACAATGTCACGACAGG 363 131 1082 Antisense
TATTTTCACCAACCAGACCAGTCAA 81 661 1158 Antisense
ACCAGTCAAACCAACCATACCAAGA 158 1 1174 Antisense
GATTGTTACCATGACCAGCATTCCA 603 433 1197 Antisense
ACGATTTCGTTTTTTCTCAGATCCA 25 93 1275 Antisense
GAATTCTCAATTAAGCTCACTCAAT 258 325 1327 Antisense
CCATTTCTCAGCCTTCATAATCATA 92 271 1459 Antisense
Sequence Source Affymetrix Proprietary Database