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[183271_at]

Description F58E2.7 /REP_DB=WormBase Gene ID /WP=CE17135 /TR=Q9TYZ9 /GB=AAC68962.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 03      6grp_cgc > 80      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 18.1
(-2.3)
A 		5.8
(-2.9)
A 		4.5
(-3)
A 		114.8
(3)
A 		110
B 44.4
(3)
A 		8.4
(-2.4)
A 		4.6
(-3)
A 		42
(2.6)
A 		40
C 6.6
(-3)
A 		30
(-1.1)
A 		24
(-1.6)
A 		81.5
(3)
P 		75
avr 23
(-1.9) 		14.7
(-2.7) 		11
(-3) 		79.4
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 51.1
(3)
A 		9
(-2.6)
A 		12.9
(-2)
A 		21.9
(-0.9)
A 		14.2
(-1.9)
A 		5.6
(-3)
A 		46
B 19.8
(-0.1)
A 		6.7
(-3)
A 		33.8
(3)
A 		14
(-1.4)
A 		17.3
(-0.7)
A 		25.4
(1.1)
A 		27
C 7.1
(-1.9)
A 		25.2
(1.8)
A 		31.3
(3)
P 		5.4
(-2.2)
A 		1.4
(-3)
A 		9.1
(-1.5)
A 		30
avr 26
(3) 		13.6
(-2) 		26
(3) 		13.8
(-1.9) 		11
(-3) 		13.4
(-2) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 6.6
(-0.9)
A 		1.3
(-3)
A 		1.2
(-3)
A 		16.8
(3)
A 		16
B 14.2
(3)
A 		2.1
(-2.5)
A 		1.1
(-3)
A 		9
(0.6)
A 		13
C 2.2
(-3)
A 		8.6
(0.3)
A 		8.4
(0.2)
A 		13.7
(3)
P 		12
avr 7.7
(-0.4) 		4
(-2.8) 		3.6
(-3) 		13.2
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.4
(3)
A 		3.2
(-1.7)
A 		2.8
(-2)
A 		5.6
(0.1)
A 		4.3
(-0.8)
A 		1.4
(-3)
A 		8
B 6.9
(0.9)
A 		2.2
(-3)
A 		8.2
(1.9)
A 		3.7
(-1.8)
A 		7
(0.9)
A 		9.5
(3)
A 		7
C 2.6
(-1.3)
A 		7.7
(2.8)
A 		8
(3)
P 		1.1
(-2.4)
A 		0.4
(-3)
A 		3
(-0.9)
A 		8
avr 6.3
(3) 		4.4
(-1.1) 		6.3
(3) 		3.5
(-3) 		3.9
(-2.1) 		4.6
(-0.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183271_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10629
Sequence Type Exemplar sequence
Representative Public ID F58E2.7 NCBI
Target Description F58E2.7 /REP_DB=WormBase Gene ID /WP=CE17135 /TR=Q9TYZ9 /GB=AAC68962.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000029903 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3456024:3460845:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F58E2.7 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3456243-3457116(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T33707 hypothetical protein F58E2.7 - Caenorhabditis elegans 1.0E-124
blast AAC68969 Serpentine receptor, class z protein 23 [Caenorhabditis elegans] ref|NP_500350.2| Serpentine Receptor, class Z family member (srz-23) [Caenorhabditis elegans] 9.0E-38
blast AAU20829 Serpentine receptor, class z protein 63 [Caenorhabditis elegans] ref|NP_001022483.1| Serpentine Receptor, class Z family member (srz-63) [Caenorhabditis elegans] 2.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.2E-23
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.7E-12
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.4E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029903 14 111-133,153-175,187-209,213-230,250-269,312-334,450-472,492-514,540-562,566-583,604-626,641-663,676-698,708-725
Sequence
Target Sequence 
>C. ELEGANS:183271_AT
aagaatagccagcgtcctactactgctcatattcataactttaattcagttaggcttgca
aaactttaaaaaagaagatttaacaaaagatggctctgcaccaactttttctgatttttt
ggatcacccagcaatactaatttttcttgtaatcagtgtgattatctctttcatctgtgg
tatctccatctacatcatagctcaagtataccacattttcatattccttctatcggttca
atccttcatggtttggtttttcccgaaactcggtccaaaaatgcggaaaattcatagaag
tatcacaaagaaagcaatacacttttactggatactctttcttttacaagctctctacac
ttttatcgaacctttttatcaactaatttcatattcactaaaccctccagtaaaagagct
ggcagattgggagaaagtttacactgtttgttttttccctgttcttgctaacattatgca
tcttgccgtattaattttcggacggaaacgagcaatttctacttatcagagtagcctaca
gaagtatgttctctggctgacgagcttcggaggtgcagccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAATAGCCAGCGTCCTACTACTG 574 151 210 Antisense
AAGATGGCTCTGCACCAACTTTTTC 602 153 296 Antisense
TTATCTCTTTCATCTGTGGTATCTC 78 681 371 Antisense
GGTATCTCCATCTACATCATAGCTC 408 505 388 Antisense
ACCACATTTTCATATTCCTTCTATC 240 85 419 Antisense
TCCTTCTATCGGTTCAATCCTTCAT 82 593 434 Antisense
GATACTCTTTCTTTTACAAGCTCTC 566 423 540 Antisense
CTCTCTACACTTTTATCGAACCTTT 341 231 560 Antisense
ATTTCATATTCACTAAACCCTCCAG 246 15 595 Antisense
GTATGTTCTCTGGCTGACGAGCTTC 486 455 753 Antisense
TGACGAGCTTCGGAGGTGCAGCCAG 267 571 767 Antisense
Sequence Source Affymetrix Proprietary Database