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[183267_at]

Description F59B1.3 /REP_DB=WormBase Gene ID /WP=CE17944 /TR=O61876 /GB=AAC17662.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 14      6grp_cgc > 22      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4.7
(-2.6)
A 		3.9
(-3)
A 		4.2
(-2.9)
A 		16.2
(3)
A 		12
B 11.5
(3)
A 		3.5
(-2.1)
A 		2.1
(-3)
A 		5.1
(-1.1)
A 		9
C 8.6
(2.1)
A 		2.6
(-3)
A 		3.4
(-2.3)
A 		9.6
(3)
A 		7
avr 8.3
(1.3) 		3.3
(-2.9) 		3.2
(-3) 		10.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 21.4
(3)
A 		7.2
(-1.8)
A 		7.8
(-1.6)
A 		3.7
(-3)
A 		6.4
(-2.1)
A 		4.3
(-2.8)
A 		18
B 23.4
(3)
A 		11.4
(-0.3)
A 		7
(-1.5)
A 		1.5
(-3)
A 		1.8
(-2.9)
A 		2.8
(-2.6)
A 		22
C 10.4
(1.3)
A 		14
(3)
A 		4.2
(-1.7)
A 		2.3
(-2.6)
A 		1.4
(-3)
A 		4.1
(-1.7)
A 		13
avr 18.4
(3) 		10.9
(0.2) 		6.3
(-1.6) 		2.5
(-3) 		3.2
(-2.7) 		3.7
(-2.5) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.7
(0.4)
A 		0.8
(-3)
A 		1.1
(-1.9)
A 		2.4
(3)
A 		2
B 3.7
(3)
A 		0.9
(-2.3)
A 		0.5
(-3)
A 		1.1
(-1.9)
A 		3
C 2.9
(3)
A 		0.8
(-3)
A 		1.2
(-1.9)
A 		1.6
(-0.7)
A 		2
avr 2.8
(3) 		0.8
(-3) 		0.9
(-2.7) 		1.7
(-0.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 3.9
(3)
A 		2.6
(0.4)
A 		1.7
(-1.4)
A 		0.9
(-3)
A 		1.9
(-1)
A 		1
(-2.8)
A 		3
B 8.1
(3)
A 		3.8
(-0.4)
A 		1.7
(-2)
A 		0.4
(-3)
A 		0.7
(-2.8)
A 		1
(-2.5)
A 		8
C 3.9
(2.4)
A 		4.3
(3)
A 		1.1
(-2.1)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1.4
(-1.6)
A 		4
avr 5.3
(3) 		3.6
(0.8) 		1.5
(-1.9) 		0.6
(-3) 		1
(-2.5) 		1.1
(-2.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183267_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15860
Sequence Type Exemplar sequence
Representative Public ID F59B1.3 NCBI
Target Description F59B1.3 /REP_DB=WormBase Gene ID /WP=CE17944 /TR=O61876 /GB=AAC17662.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071615
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F59B1.3 ENSEMBL cdna:known chromosome:CEL140:V:3619457:3620523:-1 gene:F59B1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071615 7/11 Cross Hyb Matching Probes None
GENEFINDER00000030030 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3619456-3620523(-) 97.6 100.0
Public Domain and Genome References
Ensembl F59B1.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17662 Serpentine receptor, class x protein 93 [Caenorhabditis elegans] ref|NP_504016.2| Serpentine Receptor, class X family member (srx-93) [Caenorhabditis elegans] 1.0E-135
blast CAA18353 Hypothetical protein H12C20.5 [Caenorhabditis elegans] ref|NP_505938.1| Serpentine Receptor, class X family member (srx-90) [Caenorhabditis elegans] 1.0E-105
blast NP_001023783 Serpentine Receptor, class X family member (srx-92) [Caenorhabditis elegans] gb|AAX22289.1| Serpentine receptor, class x protein 92, isoform b [Caenorhabditis elegans] 2.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 5.5E-98
Trans Membrane
ID Number Of Domains Domain Boundaries
F59B1.3 6 15-37,50-72,87-109,121-143,185-207,227-249
Sequence
Target Sequence 
>C. ELEGANS:183267_AT
attcgcgtatattttcattatctcatacaacaatcatactcgttctaatctatctctata
gaattgcacagaaaatatatgaatggttgccagagtccgcaaaaggttgctatacattat
tttcgacaaaatattttgcttggaagtacagcagtgctcccggttgtgactatgttgatg
gtgctccagaagtaattaaatatacttttataacaacggcatttttgaattttatcactt
ttttgaagatcttgcatttttacaaaaagtctaatagttcacaagtagctgtagaagcta
agaaaagaatgcggaaaaatatattaaattttatacaaacaattcttctagattcccttt
accttattgatataacttttacttttgaactaaggtttgtcgattttataactctgttta
ttttgaagcacttcaaattccagttcctggagcactcgccgtgtgtggacatatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCGCGTATATTTTCATTATCTCA 546 9 374 Antisense
AGGTTGCTATACATTATTTTCGACA 375 55 477 Antisense
GCTTGGAAGTACAGCAGTGCTCCCG 308 307 511 Antisense
TGCTCCCGGTTGTGACTATGTTGAT 699 581 528 Antisense
GTGACTATGTTGATGGTGCTCCAGA 172 483 539 Antisense
TTCTAGATTCCCTTTACCTTATTGA 289 691 719 Antisense
TTTGTCGATTTTATAACTCTGTTTA 62 667 769 Antisense
AACTCTGTTTATTTTGAAGCACTTC 227 141 783 Antisense
GAAGCACTTCAAATTCCAGTTCCTG 368 341 798 Antisense
AAATTCCAGTTCCTGGAGCACTCGC 428 115 808 Antisense
AGCACTCGCCGTGTGTGGACATATT 685 75 824 Antisense
Sequence Source Affymetrix Proprietary Database