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[183266_at]

Description K07A12.7 /REP_DB=WormBase Gene ID /WP=CE25935 /TR=Q9NAP9 /GB=CAB97235.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 30      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 42      6grp_total > 42      4grp_total > 59      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 779
1 2 3 4 range
A 1018.5
(1.6)
P 		1149.6
(2.9)
P 		1159.5
(3)
P 		539.9
(-3)
P 		620
B 1125.6
(1.3)
P 		1279.6
(3)
P 		1217.9
(2.3)
P 		749.9
(-3)
P 		530
C 1005.8
(0.3)
P 		1163.1
(1.6)
P 		1319.1
(3)
P 		629
(-3)
P 		690
avr 1050
(1.2) 		1197.4
(2.6) 		1232.2
(3) 		639.6
(-3) 		593

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 580
1 2 3 4 5 6 range
A 940.1
(-0.1)
P 		889.2
(-0.6)
P 		1225.9
(3)
P 		917.8
(-0.3)
P 		669
(-3)
P 		788.6
(-1.7)
P 		557
B 1028.9
(0.9)
P 		911.9
(-0.6)
P 		1183
(3)
P 		816
(-1.9)
P 		790.7
(-2.2)
P 		732.7
(-3)
P 		450
C 879.8
(0.4)
P 		1063.9
(3)
P 		921.6
(1)
P 		937.5
(1.2)
P 		646.4
(-3)
P 		773.3
(-1.2)
P 		418
avr 949.6
(0.6) 		955
(0.7) 		1110.2
(3) 		890.4
(-0.2) 		702
(-3) 		764.9
(-2.1) 		408
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 381
1 2 3 4 range
A 370.8
(3)
P 		249.6
(0.5)
P 		303.1
(1.6)
P 		79
(-3)
P 		292
B 359
(3)
P 		316
(1.7)
P 		282.2
(0.7)
P 		159.8
(-3)
P 		199
C 333
(0.9)
P 		334.4
(0.9)
P 		459.7
(3)
P 		106.1
(-3)
P 		354
avr 354.3
(3) 		300
(1.6) 		348.3
(2.8) 		115
(-3) 		239

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 173.3
(-3)
P 		316.2
(3)
P 		267
(0.9)
P 		232.8
(-0.5)
P 		201.9
(-1.8)
P 		192
(-2.2)
P 		143
B 358
(3)
P 		303.5
(0.7)
P 		287.3
(0)
P 		216.1
(-3)
P 		321.2
(1.4)
P 		273.2
(-0.6)
P 		142
C 326.1
(3)
P 		324.6
(2.9)
P 		234.6
(-1)
P 		188.5
(-3)
P 		209.2
(-2.1)
P 		258.9
(0.1)
P 		138
avr 285.8
(1.3) 		314.8
(3) 		263
(-0) 		212.5
(-3) 		244.1
(-1.1) 		241.4
(-1.3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183266_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2440
Sequence Type Exemplar sequence
Representative Public ID K07A12.7 NCBI
Target Description K07A12.7 /REP_DB=WormBase Gene ID /WP=CE25935 /TR=Q9NAP9 /GB=CAB97235.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059950(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059950 NCBI Caenorhabditis elegans K07A12.7 (K07A12.7) mRNA, complete cds. 11/11 None
SNAP00000033550 ENSEMBL cdna:SNAP chromosome:CEL140:I:8699255:8700616:-1 11/11 None
GENEFINDER00000033557 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8699255:8700616:-1 11/11 None
K07A12.7 ENSEMBL cdna:known chromosome:CEL140:I:8699255:8700616:-1 gene:K07A12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8699185-8700547(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07A12.7
Entrez Gene 187087 Entrez gene
SwissProt Q9NAP9 EMBL-EBI
WormBase CE25935 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB97235 Hypothetical protein K07A12.7 [Caenorhabditis elegans] ref|NP_492351.1| K07A12.7 [Caenorhabditis elegans] sp|Q9NAP9|RT15_CAEEL 28S ribosomal protein S15, mitochondrial precursor (MRS-S15) 1.0E-175
blast CAE66948 Hypothetical protein CBG12340 [Caenorhabditis briggsae] 1.0E-162
Sequence
Target Sequence 
>C. ELEGANS:183266_AT
atcagtaaggcagcattctctcgatgaaaatagtttggaaatgaaaattgcctggctaac
ggctttaattcggcattggtctcttcttgttaatgacattggacaggaaaccaaaaaaaa
gccaacatggctcacccatcgaatctggctcgtaatcaatgaacgccgtaaagctcttcg
tattttacgtgaacgtaatgagactgcattcgagaaaacaattgccgctctgaaaatttc
gtatcatgtaccgaaacagccagctcatgtgaaaactagaaaggcatgggccgaagcaca
attaaagttgagagttgaaaatgaaaaagagaagcgattggaagaattgcacgaaaagta
cgataaagaagttgaagagcataaaagagagacacaagagaagaggaaagcattgaataa
tgaattggataaacttgctcaagaaatgcgccaaattgacgttatcgaaggaaaatcgtt
tgaaacagttggaaagtatgaaccagctttaatctcttcacttactgaaactgttattca
ttcaaatctcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAGTAAGGCAGCATTCTCTCGAT 153 27 420 Antisense
AATTGCCTGGCTAACGGCTTTAATT 307 177 465 Antisense
TTTAATTCGGCATTGGTCTCTTCTT 469 673 483 Antisense
AAAAGCCAACATGGCTCACCCATCG 29 133 536 Antisense
TCACCCATCGAATCTGGCTCGTAAT 477 625 551 Antisense
GAACGCCGTAAAGCTCTTCGTATTT 232 347 580 Antisense
ACAATTGCCGCTCTGAAAATTTCGT 435 113 637 Antisense
TCATGTACCGAAACAGCCAGCTCAT 627 621 663 Antisense
AAGGCATGGGCCGAAGCACAATTAA 610 159 700 Antisense
GAACCAGCTTTAATCTCTTCACTTA 705 345 919 Antisense
ACTGTTATTCATTCAAATCTCTTCT 568 97 949 Antisense
Sequence Source Affymetrix Proprietary Database