[Home] | [Total List]

[183265_at]

Description C26F1.6 /REP_DB=WormBase Gene ID /WP=CE06880 /TR=Q18228 /GB=AAB37078.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 24      4grp_high_8_8 > 10      6grp_total > 12      4grp_total > 30      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 169
(3)
P 		136.9
(0.5)
A 		93.2
(-3)
P 		157.4
(2.1)
A 		76
B 216.8
(3)
P 		134.8
(-2.6)
P 		128.7
(-3)
A 		203.1
(2.1)
P 		88
C 205.2
(3)
P 		137.7
(-0.8)
P 		99.5
(-3)
P 		179.2
(1.5)
A 		106
avr 197
(3) 		136.5
(-1) 		107.1
(-3) 		179.9
(1.9) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 177.5
(3)
P 		157.1
(1.9)
P 		149.2
(1.5)
P 		146.4
(1.4)
P 		129.9
(0.5)
P 		63.4
(-3)
A 		114
B 150.1
(-0.8)
P 		221.4
(3)
P 		174.2
(0.5)
P 		155.6
(-0.5)
P 		125.9
(-2.1)
P 		109.5
(-3)
P 		112
C 148.7
(0.4)
P 		206.3
(3)
P 		86.9
(-2.4)
P 		89.8
(-2.3)
P 		91.2
(-2.3)
P 		74.8
(-3)
M 		132
avr 158.8
(1.1) 		194.9
(3) 		136.8
(-0.1) 		130.6
(-0.4) 		115.7
(-1.2) 		82.6
(-3) 		112
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 61.5
(3)
P 		29.7
(-2)
A 		24.4
(-2.8)
P 		23
(-3)
A 		39
B 69.1
(3)
P 		33.3
(-2.5)
P 		29.8
(-3)
A 		43.3
(-0.9)
P 		39
C 67.9
(3)
P 		39.6
(-1.5)
P 		34.7
(-2.3)
P 		30.2
(-3)
A 		38
avr 66.2
(3) 		34.2
(-2.2) 		29.6
(-3) 		32.2
(-2.6) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 32.7
(-0.4)
P 		55.9
(3)
P 		32.5
(-0.5)
P 		37.1
(0.2)
P 		39.2
(0.5)
P 		15.4
(-3)
A 		41
B 52.2
(-0.9)
P 		73.7
(3)
P 		42.3
(-2.7)
P 		41.2
(-2.9)
P 		51.2
(-1.1)
P 		40.8
(-3)
P 		33
C 55.1
(1.9)
P 		63
(3)
P 		22.1
(-2.5)
P 		18.1
(-3)
P 		29.5
(-1.5)
P 		25
(-2.1)
M 		45
avr 46.7
(0.2) 		64.2
(3) 		32.3
(-2.2) 		32.1
(-2.2) 		40
(-0.9) 		27.1
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183265_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12122
Sequence Type Exemplar sequence
Representative Public ID C26F1.6 NCBI
Target Description C26F1.6 /REP_DB=WormBase Gene ID /WP=CE06880 /TR=Q18228 /GB=AAB37078.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072603(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072603 NCBI Caenorhabditis elegans C26F1.6 (C26F1.6) mRNA, complete cds. 11/11 None
SNAP00000018567 ENSEMBL cdna:SNAP chromosome:CEL140:V:7773920:7775739:1 11/11 None
GENEFINDER00000018583 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7773920:7776225:1 11/11 None
C26F1.6 ENSEMBL cdna:known chromosome:CEL140:V:7773920:7775739:1 gene:C26F1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7773920-7775740(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26F1.6
Entrez Gene 182942 Entrez gene
SwissProt Q18228 EMBL-EBI
WormBase CE06880 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37078 Hypothetical protein C26F1.6 [Caenorhabditis elegans] tpg|DAA04941.1| TPA: VRFamide receptor 1; VRFa-R1 [Caenorhabditis elegans] ref|NP_505004.1| C26F1.6 [Caenorhabditis elegans] 0.0
blast CAE73185 Hypothetical protein CBG20584 [Caenorhabditis briggsae] 1.0E-160
blast CAE73185 Hypothetical protein CBG20584 [Caenorhabditis briggsae] 1.0E-158
blast CAE71965 Hypothetical protein CBG19036 [Caenorhabditis briggsae] 4.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.8E-9
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.6E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505004.1 7 10-32,41-63,78-100,125-147,176-198,231-253,263-285
C26F1.6 7 10-32,41-63,78-100,125-147,176-198,231-253,263-285
SNAP00000018567 7 10-32,41-63,78-100,125-147,176-198,231-253,263-285
GENEFINDER00000018583 7 10-32,41-63,78-100,125-147,176-198,231-253,263-285
Sequence
Target Sequence 
>C. ELEGANS:183265_AT
gatgtcgctcctgagaatcgtacgattgaagatcttgttgtaccgaagcttcgagcaaat
ccgcacttcttattgtggtaccagaatgttgccacgttggtgtcgcaattcgcatttcca
cttacagtgttatgtgttctcaacattcaagtagcgcgaacaattatcgaggcatccgag
caacgaagagaactagtggcaagtgtgaaacgagaacattcgactgcaaaaatgatgata
atggttgttttagtattcctcgtttgctacatcttctcatttattctaaatatatgggaa
attcttgacaaggagacttttggaggagatattggttggtttatgaatgacatcaacaat
gtacttattgttgtcaactcgacgagtgcaattgttttctactataaatattcaacaagg
ttccgaaatcaagcacggacacttcccgggatacggtggtatgctagtatgtcaaagttc
aatgtatatgatacagaggcaacatcaaatcgaacaatggtcactagatacaaagaatcc
atgatttcaataagaggcacgtcaactcgcctgagcagctctcacaatttgctctacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTCGCTCCTGAGAATCGTACGA 363 407 466 Antisense
GATCTTGTTGTACCGAAGCTTCGAG 438 411 496 Antisense
GCAAATCCGCACTTCTTATTGTGGT 96 319 520 Antisense
TGCCACGTTGGTGTCGCAATTCGCA 396 365 555 Antisense
CAATTCGCATTTCCACTTACAGTGT 126 179 571 Antisense
TATCGAGGCATCCGAGCAACGAAGA 393 657 630 Antisense
GTTGTTTTAGTATTCCTCGTTTGCT 63 437 709 Antisense
GTTTGCTACATCTTCTCATTTATTC 370 451 727 Antisense
GACACTTCCCGGGATACGGTGGTAT 178 367 903 Antisense
TAAGAGGCACGTCAACTCGCCTGAG 569 635 1016 Antisense
GCAGCTCTCACAATTTGCTCTACAA 459 313 1040 Antisense
Sequence Source Affymetrix Proprietary Database