[Home] | [Total List]

[183263_s_at]

Description F59B1.8 /REP_DB=WormBase Gene ID /WP=CE17949 /TR=O61882 /GB=AAC17659.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 54      4grp_highest_8_8 > 20      4grp_high_8_8 > 23      6grp_highest_nonorm > 91      6grp_total > 55      4grp_total > 0      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 106.2
(-1.5)
P 		87.8
(-3)
P 		161.6
(3)
P 		144.5
(1.6)
P 		74
B 57.8
(-3)
P 		62
(-2.8)
P 		149.9
(2.4)
P 		160
(3)
P 		102
C 99.9
(-1.6)
P 		70
(-3)
P 		141.8
(0.4)
P 		198.3
(3)
P 		128
avr 88
(-2.1) 		73.3
(-3) 		151.1
(2) 		167.6
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 230.1
(-0.9)
P 		241.8
(-0.3)
P 		247
(0)
P 		246.2
(-0)
P 		189.8
(-3)
P 		303.5
(3)
P 		114
B 222
(0.2)
P 		240.9
(0.9)
P 		293.9
(3)
P 		140.9
(-3)
P 		212.7
(-0.2)
P 		247
(1.2)
P 		153
C 224.3
(-0.3)
P 		229.4
(-0.1)
P 		295.6
(3)
P 		245.6
(0.7)
P 		166.8
(-3)
P 		227.2
(-0.2)
P 		129
avr 225.5
(-0.6) 		237.4
(0.2) 		278.8
(3) 		210.9
(-1.6) 		189.8
(-3) 		259.2
(1.7) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 38.7
(2.1)
P 		19.1
(-3)
P 		42.2
(3)
P 		21.2
(-2.5)
P 		23
B 18.4
(-2)
P 		15.3
(-3)
P 		34.7
(3)
P 		34.1
(2.8)
P 		19
C 33.1
(-0.3)
P 		20.1
(-3)
P 		49.4
(3)
P 		33.4
(-0.3)
P 		29
avr 30.1
(-0) 		18.2
(-3) 		42.1
(3) 		29.6
(-0.1) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 42.4
(-3)
P 		86
(3)
P 		53.8
(-1.4)
P 		62.4
(-0.2)
P 		57.3
(-0.9)
P 		73.9
(1.3)
P 		44
B 77.3
(1.4)
P 		80.2
(1.7)
P 		71.4
(0.7)
P 		37.3
(-3)
P 		86.4
(2.4)
P 		92.1
(3)
P 		55
C 83.1
(3)
P 		70
(0.7)
P 		75.2
(1.6)
P 		49.4
(-3)
P 		54
(-2.2)
P 		76.1
(1.8)
P 		34
avr 67.6
(0.5) 		78.7
(2.6) 		66.8
(0.3) 		49.7
(-3) 		65.9
(0.1) 		80.7
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183263_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15595
Sequence Type Exemplar sequence
Representative Public ID F59B1.8 NCBI
Target Description F59B1.8 /REP_DB=WormBase Gene ID /WP=CE17949 /TR=O61882 /GB=AAC17659.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071621(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071621 NCBI Caenorhabditis elegans F59B1.8 (F59B1.8) mRNA, complete cds. 11/11 None
GENEFINDER00000030024 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3641724:3644052:-1 11/11 None
F59B1.8.1 ENSEMBL cdna:known chromosome:CEL140:V:3641682:3644064:-1 gene:F59B1.8 11/11 None
F59B1.8.2 ENSEMBL cdna:known chromosome:CEL140:V:3641703:3644058:-1 gene:F59B1.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030017 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3641723-3647769(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59B1.8
Entrez Gene 178784 Entrez gene
SwissProt O61882 EMBL-EBI
WormBase CE33119 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO12415 Hypothetical protein F59B1.8 [Caenorhabditis elegans] ref|NP_504022.2| F59B1.8 [Caenorhabditis elegans] 0.0
blast G89007 protein F59B1.8 [imported] - Caenorhabditis elegans 0.0
blast AAO12414 Hypothetical protein F59B1.10 [Caenorhabditis elegans] ref|NP_872223.1| F59B1.10 [Caenorhabditis elegans] 1.0E-158
Sequence
Target Sequence 
>C. ELEGANS:183263_S_AT
gatatgttgtccgaagatggcctgaaagggattttcgatcaaagccggaatattgaccag
aaattgagtgaaaaagttgaacggattgagcagaaccacaaggagattctgaatttggag
actgttctcaatttgaataaagttgtaggaatcgaccaaaaagttatctgccatggagat
ttatgggctgccaatattttgtggacccagacggatggaggttttattgccgacaaagtt
ttggattatcaggaatctcacatgggaaatccagctgaagatttggtgcgtctcctcgtc
tcaactatttccggagccgaccgtcaatctcactgggagcacattttggagcaattttac
acttatttcacggacgagataggctccaacaatgctccatacactcttgaacagctcaag
acctctttcaaactgtatttcccagttggagcattgacactgatctccttgttcgggccg
gctgttgacatgaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATGTTGTCCGAAGATGGCCTGA 610 425 1864 Antisense
GGATGGAGGTTTTATTGCCGACAAA 315 515 2076 Antisense
AGCTGAAGATTTGGTGCGTCTCCTC 200 81 2136 Antisense
TCGTCTCAACTATTTCCGGAGCCGA 143 601 2159 Antisense
ACCGTCAATCTCACTGGGAGCACAT 429 89 2183 Antisense
GCAATTTTACACTTATTTCACGGAC 386 323 2214 Antisense
GACGAGATAGGCTCCAACAATGCTC 570 379 2236 Antisense
AACAATGCTCCATACACTCTTGAAC 323 135 2251 Antisense
GACCTCTTTCAAACTGTATTTCCCA 555 381 2283 Antisense
GAGCATTGACACTGATCTCCTTGTT 367 389 2312 Antisense
TTCGGGCCGGCTGTTGACATGAAAT 8 665 2335 Antisense
Sequence Source Affymetrix Proprietary Database