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[183262_at]

Description C04F5.3 /REP_DB=WormBase Gene ID /WP=CE27791 /TR=Q9GZD5 /GB=AAF98594.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 21      4grp_high_8_8 > 35      6grp_highest_nonorm > 80      6grp_total > 31      4grp_total > 44      6grp_highest_sub > 01_02_03      6grp_cgc > 71      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 243.2
(3)
P 		201.1
(-0.8)
P 		227.8
(1.6)
P 		177.5
(-3)
A 		66
B 230.8
(1.2)
P 		262.7
(3)
P 		167.2
(-2.3)
P 		155.1
(-3)
P 		108
C 245.7
(3)
P 		245
(2.9)
P 		179.1
(-3)
P 		213.8
(0.1)
P 		67
avr 239.9
(3) 		236.3
(2.6) 		191.4
(-2) 		182.1
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 292
(1.2)
P 		261.1
(0.4)
P 		361.9
(3)
P 		194
(-1.3)
P 		135.6
(-2.7)
P 		125
(-3)
P 		237
B 204.9
(0.4)
P 		257.8
(3)
P 		233.5
(1.8)
P 		190.6
(-0.3)
P 		151.1
(-2.2)
P 		134.2
(-3)
P 		124
C 207.9
(-0.1)
P 		302.9
(3)
P 		214.4
(0.1)
P 		248.3
(1.2)
P 		119.1
(-2.9)
P 		117
(-3)
P 		186
avr 234.9
(1.4) 		273.9
(3) 		269.9
(2.8) 		211
(0.5) 		135.3
(-2.6) 		125.4
(-3) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 88.6
(3)
P 		43.6
(-1.3)
P 		59.6
(0.2)
P 		26
(-3)
A 		63
B 73.6
(3)
P 		64.9
(1.7)
P 		38.7
(-2.2)
P 		33.1
(-3)
P 		41
C 81.3
(3)
P 		70.4
(1.6)
P 		62.4
(0.5)
P 		36
(-3)
P 		45
avr 81.2
(3) 		59.6
(0.4) 		53.6
(-0.3) 		31.7
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 53.8
(-0.8)
P 		92.8
(3)
P 		78.8
(1.7)
P 		49.2
(-1.2)
P 		40.9
(-2)
P 		30.4
(-3)
P 		62
B 71.3
(0.6)
P 		85.8
(3)
P 		56.7
(-1.9)
P 		50.5
(-2.9)
P 		61.4
(-1.1)
P 		50
(-3)
P 		36
C 77.1
(1.3)
P 		92.4
(3)
P 		54.6
(-1.2)
P 		49.9
(-1.7)
P 		38.5
(-3)
P 		39.2
(-2.9)
P 		54
avr 67.4
(0.3) 		90.3
(3) 		63.4
(-0.2) 		49.9
(-1.8) 		46.9
(-2.2) 		39.9
(-3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183262_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14976
Sequence Type Exemplar sequence
Representative Public ID C04F5.3 NCBI
Target Description C04F5.3 /REP_DB=WormBase Gene ID /WP=CE27791 /TR=Q9GZD5 /GB=AAF98594.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071964(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071964 NCBI Caenorhabditis elegans UNCoordinated family member (unc-46) (unc-46) mRNA, complete cds. 11/11 A 
SNAP00000034402 ENSEMBL cdna:SNAP chromosome:CEL140:V:5097177:5098207:-1 11/11 None
GENEFINDER00000034414 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5097177:5110579:-1 11/11 None
C04F5.3 ENSEMBL cdna:known chromosome:CEL140:V:5097177:5098716:-1 gene:C04F5.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5097176-5098676(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol unc-46
Ensembl C04F5.3
Entrez Gene 178897 Entrez gene
SwissProt Q9GZD5 EMBL-EBI
WormBase CE27791 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF98598 Udp-glucuronosyltransferase protein 63 [Caenorhabditis elegans] ref|NP_504369.1| C04F5.7 [Caenorhabditis elegans] 0.0
blast CAE64076 Hypothetical protein CBG08680 [Caenorhabditis briggsae] 0.0
blast AAF98595 Serpentine receptor, class ab (class a-like) protein 1 [Caenorhabditis elegans] ref|NP_504366.1| Serpentine Receptor, class AB (class A-like) family member (srab-1) [Caenorhabditis elegans] 0.0
blast AAF98594 Uncoordinated protein 46 [Caenorhabditis elegans] ref|NP_504365.1| UNCoordinated family member (unc-46) [Caenorhabditis elegans] 1.0E-145
blast T33766 hypothetical protein C04F5.3 - Caenorhabditis elegans 1.0E-120
blast CAE64072 Hypothetical protein CBG08674 [Caenorhabditis briggsae] 1.0E-117
blast AAF98594 Uncoordinated protein 46 [Caenorhabditis elegans] ref|NP_504365.1| UNCoordinated family member (unc-46) [Caenorhabditis elegans] 5.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 8.6E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000034402 1 99-121
GENEFINDER00000034414 20 561-583,596-615,645-667,680-699,724-746,781-803,813-835,937-959,969-988,1053-1075,1097-1119,1154-1176,1186-1208,1274-1296,1311-1330,1395-1414,1439-1461,1496-1518,1528-1547,1616-1638
Sequence
Target Sequence 
>C. ELEGANS:183262_AT
aattcgctggtagttctgcagtatttgaatctgataactcatcagttatcttctcggctc
cactgacgcaaaaatatgtttgtgaagatagaattaatgtgacattgcacagcgtaaact
ttgattttccgatattggtgatgttctctccagagattgatgttcagccgtatggaccaa
aaagcaatttttacatctgcgaacgatctcgcaaacggacactttccgagtcccttcaac
atcgttccactgttttctgcggggttgtactggccctctcatcaattgctcatatagttg
ggcatatgcttcgacgacactttatgcctcatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCGCTGGTAGTTCTGCAGTATT 523 177 317 Antisense
TAACTCATCAGTTATCTTCTCGGCT 369 639 351 Antisense
TCTCGGCTCCACTGACGCAAAAATA 625 609 368 Antisense
GATATTGGTGATGTTCTCTCCAGAG 471 427 447 Antisense
ATTGATGTTCAGCCGTATGGACCAA 451 5 472 Antisense
CGAACGATCTCGCAAACGGACACTT 369 251 516 Antisense
TTCAACATCGTTCCACTGTTTTCTG 682 685 551 Antisense
TGTTTTCTGCGGGGTTGTACTGGCC 539 561 567 Antisense
GCCCTCTCATCAATTGCTCATATAG 523 285 589 Antisense
GTTGGGCATATGCTTCGACGACACT 274 437 613 Antisense
TTCGACGACACTTTATGCCTCATCG 258 695 626 Antisense
Sequence Source Affymetrix Proprietary Database