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[183261_at]

Description H03G16.5 /REP_DB=WormBase Gene ID /WP=CE27765 /TR=Q9XU21 /GB=CAB07227.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 18      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 4.5
(-2.9)
A 		3.6
(-3)
A 		7
(-2.6)
A 		60.1
(3)
P 		57
B 1.7
(-3)
A 		31.2
(0.1)
A 		4.9
(-2.7)
A 		58.5
(3)
P 		57
C 14.5
(-2)
A 		20.1
(-1.4)
A 		5
(-3)
A 		61.6
(3)
P 		57
avr 6.9
(-2.9) 		18.3
(-1.6) 		5.6
(-3) 		60.1
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 3.3
(-2.7)
A 		2.5
(-2.9)
A 		16.8
(0)
A 		31.5
(3)
P 		25
(1.7)
P 		1.8
(-3)
A 		30
B 9.6
(-1.6)
A 		1.3
(-3)
A 		13.1
(-1)
A 		23.8
(0.9)
A 		35.9
(3)
P 		17.6
(-0.2)
A 		35
C 6.8
(-3)
A 		12.9
(-1.4)
A 		17.5
(-0.2)
A 		17.9
(-0.1)
A 		29.8
(3)
P 		28.4
(2.6)
M 		23
avr 6.6
(-2.8) 		5.6
(-3) 		15.8
(-0.5) 		24.4
(1.6) 		30.2
(3) 		15.9
(-0.5) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.7
(-2.3)
A 		0.8
(-3)
A 		1.8
(-2.3)
A 		8.8
(3)
P 		8
B 0.5
(-3)
A 		7.7
(0.6)
A 		1.1
(-2.7)
A 		12.5
(3)
P 		12
C 4.8
(-0.9)
A 		5.8
(-0.2)
A 		1.7
(-3)
A 		10.4
(3)
P 		9
avr 2.3
(-2.5) 		4.8
(-0.8) 		1.5
(-3) 		10.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.6
(-2.8)
A 		0.9
(-2.6)
A 		3.7
(-0.4)
A 		8
(3)
P 		7.5
(2.6)
P 		0.4
(-3)
A 		8
B 3.3
(-1.8)
A 		0.4
(-3)
A 		3.2
(-1.8)
A 		6.3
(-0.5)
A 		14.6
(3)
P 		6.5
(-0.4)
A 		14
C 2.5
(-3)
A 		3.9
(-1.8)
A 		4.5
(-1.3)
A 		3.6
(-2.1)
A 		9.6
(3)
P 		9.5
(2.9)
M 		7
avr 2.1
(-2.7) 		1.7
(-3) 		3.8
(-1.6) 		6
(-0.1) 		10.6
(3) 		5.5
(-0.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183261_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17334
Sequence Type Exemplar sequence
Representative Public ID H03G16.5 NCBI
Target Description H03G16.5 /REP_DB=WormBase Gene ID /WP=CE27765 /TR=Q9XU21 /GB=CAB07227.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078100(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078100 NCBI Caenorhabditis elegans H03G16.5 (H03G16.5) mRNA, complete cds. 11/11 None
GENEFINDER00000037556 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15054981:15056738:-1 11/11 None
H03G16.5 ENSEMBL cdna:known chromosome:CEL140:X:15055416:15056738:-1 gene:H03G16.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037551 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15054361-15056738(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H03G16.5
Entrez Gene 186677 Entrez gene
SwissProt Q9XU21 EMBL-EBI
WormBase CE27765 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07227 Hypothetical protein H03G16.5 [Caenorhabditis elegans] ref|NP_510501.1| H03G16.5 [Caenorhabditis elegans] 1.0E-121
blast CAB07227 Hypothetical protein H03G16.5 [Caenorhabditis elegans] ref|NP_510501.1| H03G16.5 [Caenorhabditis elegans] 1.0E-114
Sequence
Target Sequence 
>C. ELEGANS:183261_AT
agcagcaaaaggaggcggacgtcgccgaaatagcagcattgagagcagagcttgattttc
accaaaatatagctgacaagttactaaaagtaaacgaagatatgaaggaaatatcaaaaa
agaaagttttcaagatggatgacacaatgaatctattgcgtttgggaacacgtgtgcatt
tgattatccagaacaaagaggaattgatcgacaaatacaaagcgatgcttgagaacaatc
aaaatcataagaatacattacgtgaaacaattcaattgtataaaaaccttattcatcgtt
tgctcgagatagcagcaaaagatctcgaaacatctcaagaacaaaaaggtgttataaaca
aagcttttgaagagcttgaatcgacaaaatcatttgctcaagacaacgatctgggcaata
aatcggaagagagttcatcgagtgacacacaagtagttgttactccaaaagcagctccaa
ttccgaacattggcaattctggaatgaacagtgttagacgctcaagcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGCAAAAGGAGGCGGACGTCGC 638 65 101 Antisense
GACGTCGCCGAAATAGCAGCATTGA 336 377 118 Antisense
GAGAGCAGAGCTTGATTTTCACCAA 119 395 141 Antisense
ATGAATCTATTGCGTTTGGGAACAC 50 45 247 Antisense
GAACACGTGTGCATTTGATTATCCA 558 351 266 Antisense
AAACCTTATTCATCGTTTGCTCGAG 499 125 384 Antisense
ATTTGCTCAAGACAACGATCTGGGC 121 15 492 Antisense
GAGAGTTCATCGAGTGACACACAAG 468 395 529 Antisense
GACACACAAGTAGTTGTTACTCCAA 268 367 544 Antisense
CAAAAGCAGCTCCAATTCCGAACAT 441 189 566 Antisense
GAACAGTGTTAGACGCTCAAGCAGA 533 351 606 Antisense
Sequence Source Affymetrix Proprietary Database