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[183260_at]

Description Y4C6B.4 /REP_DB=WormBase Gene ID /WP=CE21308 /TR=Q9UAZ7 /GB=AAD14767.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 43.3
(-1.2)
A 		25.3
(-3)
A 		38.4
(-1.7)
A 		86.9
(3)
A 		62
B 79.2
(3)
A 		34.7
(-1)
A 		13.1
(-3)
A 		60.1
(1.3)
A 		66
C 83.3
(1.4)
A 		8.8
(-3)
A 		36.4
(-1.4)
A 		109.5
(3)
A 		101
avr 68.6
(1.4) 		22.9
(-3) 		29.3
(-2.4) 		85.5
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 84.7
(1.1)
A 		9.3
(-3)
A 		119.7
(3)
P 		34.5
(-1.6)
A 		83.2
(1)
A 		51.7
(-0.7)
A 		110
B 65.2
(-1.4)
M 		49
(-3)
A 		109.8
(3)
P 		85.4
(0.6)
A 		64.1
(-1.5)
A 		70.3
(-0.9)
A 		61
C 33.2
(-2.3)
A 		111.9
(3)
M 		22.1
(-3)
A 		66.4
(-0)
A 		72.5
(0.4)
A 		93.2
(1.8)
A 		90
avr 61
(-2.1) 		56.7
(-3) 		83.9
(3) 		62.1
(-1.8) 		73.3
(0.7) 		71.7
(0.3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 15.8
(3)
A 		5.5
(-3)
A 		10
(-0.4)
A 		12.7
(1.2)
A 		10
B 25.2
(3)
A 		8.6
(-1.5)
A 		3
(-3)
A 		12.8
(-0.4)
A 		22
C 27.6
(3)
A 		2.5
(-3)
A 		12.7
(-0.6)
A 		18.5
(0.8)
A 		25
avr 22.9
(3) 		5.5
(-3) 		8.6
(-1.9) 		14.7
(0.2) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 15.6
(0.2)
A 		3.3
(-3)
A 		26.1
(3)
P 		8.8
(-1.6)
A 		25.1
(2.7)
A 		12.6
(-0.6)
A 		23
B 22.7
(0.7)
M 		16.3
(-3)
A 		26.7
(3)
P 		22.6
(0.6)
A 		26
(2.6)
A 		26.2
(2.7)
A 		10
C 12.3
(-1.6)
A 		34.1
(3)
M 		5.6
(-3)
A 		13.4
(-1.4)
A 		23.5
(0.8)
A 		31.2
(2.4)
A 		29
avr 16.9
(-1.8) 		17.9
(-1.2) 		19.5
(-0.2) 		14.9
(-3) 		24.9
(3) 		23.3
(2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183260_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10597
Sequence Type Exemplar sequence
Representative Public ID Y4C6B.4 NCBI
Target Description Y4C6B.4 /REP_DB=WormBase Gene ID /WP=CE21308 /TR=Q9UAZ7 /GB=AAD14767.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171337
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000011104 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5319243:5329216:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171337 8/11 Cross Hyb Matching Probes None
SNAP00000011096 1/11 Cross Hyb Matching Probes None
Y4C6B.4a 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5325956-5329201(+) 97.25 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T34014 hypothetical protein Y4C6B.4 - Caenorhabditis elegans 0.0
blast AAN73291 Hypothetical protein Y4C6B.4a [Caenorhabditis elegans] ref|NP_741396.1| Y4C6B.4a [Caenorhabditis elegans] 0.0
blast AAD14769 Hypothetical protein Y4C6B.5 [Caenorhabditis elegans] ref|NP_500781.2| Y4C6B.5 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011104 25 7-29,66-88,93-115,130-152,164-186,190-212,257-279,294-316,325-344,349-371,384-406,411-433,472-494,529-548,555-577,581-603,616-638,648-670,682-701,743-765,772-794,829-848,855-877,892-914,923-945
Sequence
Target Sequence 
>C. ELEGANS:183260_AT
tagccaagcgattgttttccggcaaattgcagtttttaaataatttaaaaactaaaaatt
atagttatattctacataaatttctagatttactgatttccaccaaaaaaaagaatatca
cattttttccagcagacaacaaactcctaaataatattttcagatgcatttctgagatgg
gaaaaattcacattttcaacacacttgctgttggttttgttggaatttcatttcttattt
ttggtaaaattcctccggaacacaatatctctgcagtcgtttgccttgctattttggaat
gttttatcagttttaacagtggtggattttacaaatgtgggacacttcatgcgagacaat
tctcatcaattgtaatatctgcaattcaatttacaaaatgtatttctctattttctggac
cagctctagttgcattttttgtaacggatgaatcaaatcaaacacaatggagtcacgttt
ttatgacacttgcaggattttcatttgtggccaatattctctcattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGCCAAGCGATTGTTTTCCGGCAA 694 649 1214 Antisense
TTCTAGATTTACTGATTTCCACCAA 623 689 1295 Antisense
ATCACATTTTTTCCAGCAGACAACA 564 27 1330 Antisense
TTCACATTTTCAACACACTTGCTGT 351 687 1400 Antisense
CACTTGCTGTTGGTTTTGTTGGAAT 332 197 1415 Antisense
TTCCTCCGGAACACAATATCTCTGC 315 697 1463 Antisense
CAATATCTCTGCAGTCGTTTGCCTT 440 181 1476 Antisense
GTCGTTTGCCTTGCTATTTTGGAAT 56 473 1489 Antisense
GGGACACTTCATGCGAGACAATTCT 427 493 1552 Antisense
GTATTTCTCTATTTTCTGGACCAGC 276 453 1613 Antisense
TTTGTGGCCAATATTCTCTCATTCA 383 667 1717 Antisense
Sequence Source Affymetrix Proprietary Database