[Home] | [Total List]

[183259_at]

Description F59A7.6 /REP_DB=WormBase Gene ID /WP=CE11446 /TR=O16280 /GB=AAB65341.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 8.8
(-3)
A 		28.3
(3)
A 		24.5
(1.8)
A 		13
(-1.7)
A 		20
B 28.4
(-0.3)
A 		9.1
(-2.6)
A 		55.1
(3)
A 		6.1
(-3)
A 		49
C 51.7
(2.3)
A 		11.1
(-3)
A 		56.9
(3)
A 		18.8
(-2)
A 		46
avr 29.6
(0.1) 		16.2
(-2.3) 		45.5
(3) 		12.6
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 17.1
(-0.5)
A 		12.2
(-1.4)
A 		2.8
(-3)
A 		37
(3)
A 		9.7
(-1.8)
A 		6.5
(-2.4)
A 		34
B 7.9
(-3)
A 		40.9
(3)
A 		24
(-0.1)
A 		30.4
(1.1)
A 		13.1
(-2.1)
A 		11.1
(-2.4)
A 		33
C 24
(-0.3)
A 		17.1
(-1.5)
A 		8.5
(-3)
A 		15.4
(-1.8)
A 		43.3
(3)
A 		40.4
(2.5)
A 		35
avr 16.3
(-1.3) 		23.4
(1.4) 		11.8
(-3) 		27.6
(3) 		22
(0.9) 		19.3
(-0.2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 3.2
(-1.3)
A 		6.1
(2.6)
A 		6.4
(3)
A 		1.9
(-3)
A 		5
B 9.1
(1.1)
A 		2.3
(-2.5)
A 		12.8
(3)
A 		1.3
(-3)
A 		12
C 17.1
(2)
A 		3.2
(-3)
A 		19.8
(3)
A 		3.2
(-3)
A 		17
avr 9.8
(1.2) 		3.9
(-2) 		13
(3) 		2.1
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.1
(-1.3)
A 		4.4
(-0.4)
A 		0.6
(-3)
A 		9.4
(3)
A 		2.9
(-1.4)
A 		1.6
(-2.3)
A 		9
B 2.7
(-3)
A 		13.6
(3)
A 		5.8
(-1.3)
A 		8.1
(-0)
A 		5.3
(-1.6)
A 		4.1
(-2.2)
A 		11
C 8.9
(0.4)
A 		5.2
(-1.5)
A 		2.2
(-3)
A 		3.1
(-2.5)
A 		14
(3)
A 		13.5
(2.7)
A 		12
avr 4.9
(-0.5) 		7.7
(3) 		2.9
(-3) 		6.9
(2) 		7.4
(2.6) 		6.4
(1.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183259_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15588
Sequence Type Exemplar sequence
Representative Public ID F59A7.6 NCBI
Target Description F59A7.6 /REP_DB=WormBase Gene ID /WP=CE11446 /TR=O16280 /GB=AAB65341.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F59A7.6
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F59A7.6 F59A7.6 /REP_DB=WormBase Gene ID /WP=CE11446 /TR=O16280 /GB=AAB65341.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2017932-2018830(+) 70.02 100.0
Sequence
Target Sequence 
>C. ELEGANS:183259_AT
tgaatttgccgagcaccgcgaaatttaaaaaagtgcattttccgaatttgccgatctcgg
taaattttaaaattcgccgcgcataccacaaattggttttcaaaaaagttggaagtgtca
aaaattatctcattattcggtgtttgctcagcctggcaaatttgccgaattcgccgaact
cggcaaactttgagatttgccgcacatccctgatgagaacccgtaaatttaaaaattttg
ttattcagtctttcaaaatttttctcattttttgcactattgttgattttcagactattt
tggccattttgaaccaaaatccatatttacgaacaacttcaccttcgaatttcctttcat
taaaaaatctgaaagtcaaaaaaaatctattctccattttccagaaaatcaaactcatcc
tcgattttgatctgagagatataaatttgatttatatcctcccaaattttcatacgaaaa
atgttcactcttcgtttctttgttcgcgcctttttggagcttttttcttcattgccagac
tactcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATTTGCCGAGCACCGCGAAATT 7 575 59 Antisense
AAAATTCGCCGCGCATACCACAAAT 693 131 127 Antisense
CATTATTCGGTGTTTGCTCAGCCTG 706 215 189 Antisense
TTTGCCGCACATCCCTGATGAGAAC 349 669 254 Antisense
GATTTTCAGACTATTTTGGCCATTT 126 429 343 Antisense
GAACAACTTCACCTTCGAATTTCCT 581 351 389 Antisense
AAACTCATCCTCGATTTTGATCTGA 561 127 469 Antisense
ATATCCTCCCAAATTTTCATACGAA 374 21 512 Antisense
GAAAAATGTTCACTCTTCGTTTCTT 362 355 534 Antisense
GCCTTTTTGGAGCTTTTTTCTTCAT 117 281 566 Antisense
TTTTCTTCATTGCCAGACTACTCAA 75 677 581 Antisense
Sequence Source Affymetrix Proprietary Database