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[183258_at]

Description F38B6.2 /REP_DB=WormBase Gene ID /WP=CE04515 /TR=Q20147 /GB=AAA81146.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_high_8_8 > 38      6grp_highest_nonorm > 90      6grp_total > 82      4grp_total > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 39.5
(-3)
M 		181.9
(3)
P 		180.1
(2.9)
P 		132.8
(0.9)
P 		142
B 68.6
(-2)
P 		123.8
(1.2)
P 		154.1
(3)
P 		51.1
(-3)
P 		103
C 63.1
(-3)
P 		135.9
(0.7)
P 		123.1
(0.1)
P 		179.9
(3)
P 		117
avr 57.1
(-3) 		147.2
(2.7) 		152.4
(3) 		121.3
(1) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 46
(-3)
P 		86.4
(0.9)
P 		78.5
(0.1)
P 		89.8
(1.2)
P 		108.2
(3)
P 		79.2
(0.2)
P 		62
B 42.6
(-3)
P 		123.1
(3)
P 		101.7
(1.4)
P 		116.9
(2.5)
P 		104.1
(1.6)
P 		54.2
(-2.1)
P 		81
C 51.8
(-3)
P 		133.2
(3)
P 		61.2
(-2.3)
P 		115
(1.7)
P 		88.7
(-0.3)
P 		104.5
(0.9)
P 		81
avr 46.8
(-3) 		114.2
(3) 		80.5
(0) 		107.2
(2.4) 		100.3
(1.8) 		79.3
(-0.1) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 14.4
(-3)
M 		39.5
(1.6)
P 		47.1
(3)
P 		19.4
(-2.1)
P 		33
B 21.9
(-0.3)
P 		30.6
(1.8)
P 		35.7
(3)
P 		10.9
(-3)
P 		25
C 20.9
(-3)
P 		39.1
(2)
P 		42.9
(3)
P 		30.3
(-0.4)
P 		22
avr 19.1
(-3) 		36.4
(1.6) 		41.9
(3) 		20.2
(-2.7) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 8.5
(-3)
P 		30.7
(2.5)
P 		17.1
(-0.9)
P 		22.8
(0.5)
P 		32.7
(3)
P 		19.3
(-0.3)
P 		24
B 14.8
(-3)
P 		41
(2.7)
P 		24.7
(-0.8)
P 		31
(0.5)
P 		42.3
(3)
P 		20.2
(-1.8)
P 		28
C 19.2
(-2.1)
P 		40.6
(3)
P 		15.6
(-3)
P 		23.1
(-1.2)
P 		28.7
(0.1)
P 		35
(1.7)
P 		25
avr 14.2
(-3) 		37.4
(3) 		19.1
(-1.7) 		25.6
(-0.1) 		34.6
(2.3) 		24.8
(-0.3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183258_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16065
Sequence Type Exemplar sequence
Representative Public ID F38B6.2 NCBI
Target Description F38B6.2 /REP_DB=WormBase Gene ID /WP=CE04515 /TR=Q20147 /GB=AAA81146.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076725(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076725 NCBI Caenorhabditis elegans F38B6.2 (F38B6.2) mRNA, complete cds. 11/11 None
GENEFINDER00000034014 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6698561:6700709:1 10/11 None
F38B6.2 ENSEMBL cdna:known chromosome:CEL140:X:6698561:6699964:1 gene:F38B6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034007 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6698560-6699964(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38B6.2
Entrez Gene 185452 Entrez gene
SwissProt Q20147 EMBL-EBI
WormBase CE04515 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE65775 Hypothetical protein CBG10870 [Caenorhabditis briggsae] 0.0
blast AAA81146 Hypothetical protein F38B6.2 [Caenorhabditis elegans] ref|NP_509126.1| F38B6.2 [Caenorhabditis elegans] 1.0E-118
blast AAA81146 Hypothetical protein F38B6.2 [Caenorhabditis elegans] ref|NP_509126.1| F38B6.2 [Caenorhabditis elegans] 1.0E-110
blast CAE65775 Hypothetical protein CBG10870 [Caenorhabditis briggsae] 9.0E-92
blast AAA81145 Hypothetical protein F38B6.7 [Caenorhabditis elegans] ref|NP_509125.2| F38B6.7 [Caenorhabditis elegans] 8.0E-67
blast AAA81145 Hypothetical protein F38B6.7 [Caenorhabditis elegans] ref|NP_509125.2| F38B6.7 [Caenorhabditis elegans] 6.0E-28
Sequence
Target Sequence 
>C. ELEGANS:183258_AT
gaaagttggcagtctcctgatttgacttatgtaccatctatcaaccagtgttcagattac
acaacaggtaacggtgtggcttgtaaaccaaataacccattcacttgtactgggagaaat
cccttctgcgccactgctggagatagagccttcaagtgttgcagcgacattattcaggat
tctacagaagtgaaaatgcttaattcttcccaaatcaagccaatttgccccgccggtgcg
attccttataagatgccacaagttttgttatgcgacccgacaattgttaatatctgtcca
tacgactataagtgcgttgaagcagcaaacggacaatatcttcctgccgatggccgatct
ctttgctgcaagaccaccactctgtactcgtttgcctcggtttttggagaggctaaaata
agccctcggctagtgccaaatccccctctttcagcgatcgaatatgtgcgtcggtatttt
ttgttcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGTTGGCAGTCTCCTGATTTGA 316 359 106 Antisense
ATGTACCATCTATCAACCAGTGTTC 215 47 134 Antisense
ACTGGGAGAAATCCCTTCTGCGCCA 417 97 214 Antisense
CTTCTGCGCCACTGCTGGAGATAGA 508 219 228 Antisense
GAGCCTTCAAGTGTTGCAGCGACAT 604 385 251 Antisense
CACAAGTTTTGTTATGCGACCCGAC 12 195 362 Antisense
AACGGACAATATCTTCCTGCCGATG 289 143 433 Antisense
CGATCTCTTTGCTGCAAGACCACCA 382 249 460 Antisense
TACTCGTTTGCCTCGGTTTTTGGAG 667 413 490 Antisense
ATAAGCCCTCGGCTAGTGCCAAATC 112 25 523 Antisense
TGTGCGTCGGTATTTTTTGTTCCTC 377 557 570 Antisense
Sequence Source Affymetrix Proprietary Database