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[183257_at]

Description C09E8.1 /REP_DB=WormBase Gene ID /WP=CE19347 /TR=Q9TZQ4 /GB=AAC26255.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 15      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 40      6grp_total > 05      4grp_total > 62      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 557
1 2 3 4 range
A 983.1
(3)
P 		788.8
(0.5)
P 		796.8
(0.6)
P 		509
(-3)
P 		474
B 882.9
(3)
P 		648.4
(-0.5)
P 		722
(0.6)
P 		478.9
(-3)
P 		404
C 912.8
(3)
P 		685.9
(0.2)
P 		715.9
(0.6)
P 		426.1
(-3)
P 		487
avr 926.3
(3) 		707.7
(0.1) 		744.9
(0.6) 		471.3
(-3) 		455

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 584
1 2 3 4 5 6 range
A 888.7
(3)
P 		752.6
(0.9)
P 		499.6
(-3)
P 		551.6
(-2.2)
P 		556.2
(-2.1)
P 		519.2
(-2.7)
P 		389
B 681
(2.1)
P 		730.6
(3)
P 		566.3
(-0)
P 		559.2
(-0.1)
P 		545.4
(-0.4)
P 		403.1
(-3)
P 		328
C 986.8
(3)
P 		887.5
(1.8)
P 		639.8
(-1.2)
P 		547.8
(-2.3)
P 		622.4
(-1.4)
P 		490.1
(-3)
P 		497
avr 852.2
(3) 		790.2
(2) 		568.6
(-1.5) 		552.9
(-1.7) 		574.7
(-1.4) 		470.8
(-3) 		381
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 357.9
(3)
P 		171.2
(-1)
P 		208.3
(-0.2)
P 		74.5
(-3)
P 		283
B 281.6
(3)
P 		160.1
(-1.1)
P 		167.3
(-0.8)
P 		102.1
(-3)
P 		180
C 302.2
(3)
P 		197.2
(0.3)
P 		249.5
(1.6)
P 		71.8
(-3)
P 		230
avr 313.9
(3) 		176.2
(-0.6) 		208.4
(0.3) 		82.8
(-3) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 163.8
(-0.9)
P 		267.6
(3)
P 		108.8
(-3)
P 		139.9
(-1.8)
P 		167.8
(-0.8)
P 		126.4
(-2.3)
P 		159
B 237
(2.6)
P 		243.2
(3)
P 		137.5
(-3)
P 		148.1
(-2.4)
P 		221.6
(1.8)
P 		150.3
(-2.3)
P 		106
C 365.8
(3)
P 		270.8
(0.8)
P 		162.8
(-1.8)
P 		110.2
(-3)
P 		201.4
(-0.9)
P 		164.1
(-1.7)
P 		256
avr 255.5
(2.8) 		260.5
(3) 		136.4
(-2.8) 		132.7
(-3) 		196.9
(0) 		146.9
(-2.3) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183257_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4739
Sequence Type Exemplar sequence
Representative Public ID C09E8.1 NCBI
Target Description C09E8.1 /REP_DB=WormBase Gene ID /WP=CE19347 /TR=Q9TZQ4 /GB=AAC26255.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182221(11), NM_061356(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182221 NCBI Caenorhabditis elegans C09E8.1b (C09E8.1) mRNA, complete cds. 11/11 None
NM_061356 NCBI Caenorhabditis elegans C09E8.1a (C09E8.1) mRNA, complete cds. 11/11 A 
SNAP00000029458 ENSEMBL cdna:SNAP chromosome:CEL140:II:561832:563973:1 11/11 None
GENEFINDER00000029476 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:561579:563973:1 11/11 None
C09E8.1b ENSEMBL cdna:known chromosome:CEL140:II:556483:564090:1 gene:C09E8.1 11/11 None
C09E8.1a ENSEMBL cdna:known chromosome:CEL140:II:556550:564122:1 gene:C09E8.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:556549-563973(+) 100.0 100.0
Public Domain and Genome References
Ensembl C09E8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN60534 Hypothetical protein C09E8.1b [Caenorhabditis elegans] ref|NP_872021.1| C09E8.1b [Caenorhabditis elegans] 0.0
blast AAC26255 Hypothetical protein C09E8.1a [Caenorhabditis elegans] ref|NP_493757.2| C09E8.1a [Caenorhabditis elegans] 0.0
blast CAE62884 Hypothetical protein CBG07071 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_872021.1 14 7-26,31-53,181-203,218-240,297-319,369-391,404-422,437-454,487-509,534-556,609-631,646-663,680-702,707-729
NP_493757.2 14 7-26,31-53,181-203,218-240,297-319,369-391,404-422,437-454,487-509,534-556,609-631,646-663,680-702,712-734
C09E8.1b 14 7-26,31-53,181-203,218-240,297-319,369-391,404-422,437-454,487-509,534-556,609-631,646-663,680-702,707-729
C09E8.1a 14 7-26,31-53,181-203,218-240,297-319,369-391,404-422,437-454,487-509,534-556,609-631,646-663,680-702,712-734
SNAP00000029458 5 36-58,111-133,148-165,182-204,214-236
GENEFINDER00000029476 5 44-66,119-141,156-173,190-212,222-244
Sequence
Target Sequence 
>C. ELEGANS:183257_AT
gcagtaaacccgaacaagccacgtgctcactccctggcctacagtatcatgaatcgactg
attttccggcggatgtcctacaaaacagccattttttcactgtttctttttgaaactttt
atcggaatccttctagtcgtattttttttcctaaattcttcaaatctttgggtatcaagt
acccgtgtcgccaatcaataccgtagtgttttactgctcatctttgtagtttgccatatt
tggacactttttgaaatgcggaaatgtcagcaatactcgcaaattgaaggagagagactc
tccttctacattggtctcgccacgatggaaactgcaatgcttaacgcctatatgtggatg
tacgcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTAAACCCGAACAAGCCACGTG 431 299 1834 Antisense
ACTCCCTGGCCTACAGTATCATGAA 518 99 1862 Antisense
AATCGACTGATTTTCCGGCGGATGT 278 169 1885 Antisense
GGCGGATGTCCTACAAAACAGCCAT 503 541 1901 Antisense
ATCGGAATCCTTCTAGTCGTATTTT 1 19 1954 Antisense
CCGTGTCGCCAATCAATACCGTAGT 445 265 2016 Antisense
TACCGTAGTGTTTTACTGCTCATCT 292 649 2032 Antisense
CTGCTCATCTTTGTAGTTTGCCATA 11 239 2047 Antisense
GAGACTCTCCTTCTACATTGGTCTC 487 393 2127 Antisense
GAAACTGCAATGCTTAACGCCTATA 669 355 2161 Antisense
AACGCCTATATGTGGATGTACGCAG 626 145 2176 Antisense
Sequence Source Affymetrix Proprietary Database