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[183256_at]

Description C01G5.6 /REP_DB=WormBase Gene ID /WP=CE23513 /TR=Q17569 /GB=AAD47115.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 95      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 97      6grp_total > 76      4grp_total > 09      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2260
1 2 3 4 range
A 605.3
(-2.9)
P 		583
(-3)
P 		738.7
(-2.5)
P 		2410.6
(3)
P 		1828
B 511.6
(-3)
P 		710.4
(-2.4)
P 		865.3
(-2)
P 		2601.4
(3)
P 		2090
C 664
(-2.9)
P 		630.7
(-3)
P 		759.3
(-2.6)
P 		2771.6
(3)
P 		2141
avr 593.6
(-3) 		641.4
(-2.9) 		787.8
(-2.4) 		2594.5
(3) 		2001

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 946
1 2 3 4 5 6 range
A 755
(-2.4)
P 		673.4
(-3)
P 		957.1
(-0.9)
P 		1004.5
(-0.6)
P 		1066.6
(-0.1)
P 		1500.5
(3)
P 		827
B 603.6
(-3)
P 		648.5
(-2.7)
P 		946.6
(-0.8)
P 		1114.7
(0.3)
P 		1110.6
(0.3)
P 		1520.9
(3)
P 		917
C 605
(-3)
P 		762.7
(-2)
P 		867.3
(-1.3)
P 		1137.9
(0.4)
P 		863.9
(-1.4)
P 		1549.6
(3)
P 		945
avr 654.5
(-3) 		694.9
(-2.7) 		923.7
(-1.1) 		1085.7
(-0) 		1013.7
(-0.5) 		1523.7
(3) 		869
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 428
1 2 3 4 range
A 220.4
(-0.5)
P 		126.6
(-3)
P 		193.1
(-1.2)
P 		352.9
(3)
P 		226
B 163.2
(-3)
P 		175.4
(-2.8)
P 		200.5
(-2.4)
P 		554.3
(3)
P 		391
C 219.8
(-2.2)
P 		181.3
(-3)
P 		264.6
(-1.3)
P 		467.3
(3)
P 		286
avr 201.1
(-2.2) 		161.1
(-3) 		219.4
(-1.8) 		458.2
(3) 		297

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 428
1 2 3 4 5 6 range
A 139.2
(-3)
P 		239.5
(-0.3)
P 		208.4
(-1.2)
P 		254.8
(0.1)
P 		321.8
(1.8)
P 		365.3
(3)
P 		226
B 210
(-3)
P 		215.9
(-2.9)
P 		229.9
(-2.7)
P 		295.2
(-1.6)
P 		451.2
(1.1)
P 		567.1
(3)
P 		357
C 224.2
(-2.9)
P 		232.7
(-2.8)
P 		220.7
(-3)
P 		228.8
(-2.8)
P 		279.5
(-1.8)
P 		518.7
(3)
P 		298
avr 191.1
(-3) 		229.4
(-2.2) 		219.7
(-2.4) 		259.6
(-1.6) 		350.8
(0.3) 		483.7
(3) 		293
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183256_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10749
Sequence Type Exemplar sequence
Representative Public ID C01G5.6 NCBI
Target Description C01G5.6 /REP_DB=WormBase Gene ID /WP=CE23513 /TR=Q17569 /GB=AAD47115.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068591(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068591 NCBI Caenorhabditis elegans C01G5.6 (C01G5.6) mRNA, complete cds. 11/11 None
SNAP00000022678 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6522858:6524329:1 11/11 None
GENEFINDER00000022694 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6522858:6524329:1 11/11 None
C01G5.6.1 ENSEMBL cdna:known chromosome:CEL140:IV:6522856:6524443:1 gene:C01G5.6 11/11 None
C01G5.6.2 ENSEMBL cdna:known chromosome:CEL140:IV:6522858:6524443:1 gene:C01G5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6522863-6524335(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G5.6
Entrez Gene 177413 Entrez gene
SwissProt Q17569 EMBL-EBI
WormBase CE23513 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD47115 Hypothetical protein C01G5.6 [Caenorhabditis elegans] ref|NP_500992.1| C01G5.6 [Caenorhabditis elegans] 0.0
blast A88711 protein C01G5.6 [imported] - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:183256_AT
atgttccgttcctacgtcgaagaagaagttcacaaggaagaaattatcaaaaacaatcca
aattcagcagaagcaaaaatgtttttggaagcgaaaagaaataaagaactgattgatgaa
caatatttacactcaatgacccaccacccagaagatatgattgccgtcacaatgctctac
atcaatttgactataaatggtgttccagtcaaagctttcattgattctggagctcaaaaa
tcgatcatgtcaatggcatgtgctgaacgttgtggtcttaatggattaatcgatagacgg
ttccagtcaatggcccgaggagttggtggaacagagaaaatcgagggaaagattcattta
tgcgatgtgaaagttgaagatgctcacttttcatgcccattcgaggtaatggctcgtcgt
gagatggatcttctcatcgggcttaatgtgctccgtaagcatgggtgttgtattaatctg
aaaacttcacgattggagtttggcaacggaacaacaactccattccttcaatccaatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTCCGTTCCTACGTCGAAGAAG 498 45 571 Antisense
TGACCCACCACCCAGAAGATATGAT 573 569 707 Antisense
TGCCGTCACAATGCTCTACATCAAT 486 585 732 Antisense
TGGTGTTCCAGTCAAAGCTTTCATT 456 551 768 Antisense
GGCATGTGCTGAACGTTGTGGTCTT 317 537 825 Antisense
TAGACGGTTCCAGTCAATGGCCCGA 331 651 864 Antisense
AATGGCCCGAGGAGTTGGTGGAACA 387 161 879 Antisense
TCACTTTTCATGCCCATTCGAGGTA 9 627 954 Antisense
GAGATGGATCTTCTCATCGGGCTTA 410 395 991 Antisense
CATCGGGCTTAATGTGCTCCGTAAG 183 95 1005 Antisense
CAACTCCATTCCTTCAATCCAATGA 70 189 1085 Antisense
Sequence Source Affymetrix Proprietary Database