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[183255_at]

Description T22E5.6 /REP_DB=WormBase Gene ID /WP=CE04995 /TR=Q22684 /GB=AAA83617.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 75.8
(1)
A 		18.5
(-3)
A 		44.1
(-1.2)
A 		104
(3)
A 		86
B 118.3
(3)
A 		62.1
(-1.5)
A 		43.7
(-3)
A 		65.6
(-1.2)
A 		75
C 84.4
(-0.7)
M 		63.1
(-3)
A 		86
(-0.6)
A 		119.7
(3)
P 		57
avr 92.8
(2.6) 		47.9
(-3) 		57.9
(-1.8) 		96.4
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 132
(3)
A 		65.7
(-0.9)
A 		75.7
(-0.3)
P 		91.5
(0.6)
A 		91.4
(0.6)
A 		29.1
(-3)
A 		103
B 83.4
(1.6)
A 		107.2
(3)
A 		61
(0.2)
P 		6.9
(-3)
A 		52.9
(-0.2)
A 		41.2
(-0.9)
A 		100
C 55.9
(-1.8)
A 		98.9
(3)
P 		87.1
(1.7)
A 		91.4
(2.2)
A 		68.6
(-0.4)
A 		45.2
(-3)
A 		54
avr 90.4
(3) 		90.6
(3) 		74.6
(1.2) 		63.3
(-0.1) 		71
(0.7) 		38.5
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 27.6
(3)
A 		4
(-3)
A 		11.5
(-1.1)
A 		15.2
(-0.2)
A 		24
B 37.7
(3)
A 		15.3
(-1.9)
A 		10.1
(-3)
A 		14
(-2.2)
A 		28
C 27.9
(1.9)
M 		18.1
(-3)
A 		30
(3)
A 		20.2
(-1.9)
P 		12
avr 31.1
(3) 		12.5
(-3) 		17.2
(-1.5) 		16.5
(-1.7) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 24.3
(2)
A 		23.4
(1.8)
A 		16.5
(-0.2)
P 		23.2
(1.7)
A 		27.6
(3)
A 		7.1
(-3)
A 		21
B 29
(1.8)
A 		35.7
(3)
A 		14.8
(-0.7)
P 		1.8
(-3)
A 		21.5
(0.5)
A 		15.4
(-0.6)
A 		34
C 20.7
(-0.8)
A 		30.2
(3)
P 		22.2
(-0.2)
A 		18.4
(-1.7)
A 		22.2
(-0.2)
A 		15.1
(-3)
A 		15
avr 24.7
(1.2) 		29.8
(3) 		17.8
(-1.2) 		14.5
(-2.3) 		23.8
(0.9) 		12.5
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183255_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16047
Sequence Type Exemplar sequence
Representative Public ID T22E5.6 NCBI
Target Description T22E5.6 /REP_DB=WormBase Gene ID /WP=CE04995 /TR=Q22684 /GB=AAA83617.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076677(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076677 NCBI Caenorhabditis elegans T22E5.6 (T22E5.6) mRNA, complete cds. 11/11 None
SNAP00000012237 ENSEMBL cdna:SNAP chromosome:CEL140:X:6414117:6416355:-1 10/11 None
GENEFINDER00000012241 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6414117:6416355:-1 11/11 None
T22E5.6 ENSEMBL cdna:known chromosome:CEL140:X:6414117:6416355:-1 gene:T22E5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6414116-6416355(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22E5.6
Entrez Gene 188746 Entrez gene
SwissProt Q22684 EMBL-EBI
WormBase CE04995 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6979 response to oxidative stress inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83617 Hypothetical protein T22E5.6 [Caenorhabditis elegans] ref|NP_509078.1| T22E5.6 [Caenorhabditis elegans] 1.0E-120
blast AAA83617 Hypothetical protein T22E5.6 [Caenorhabditis elegans] ref|NP_509078.1| T22E5.6 [Caenorhabditis elegans] 1.0E-119
blast CAE61255 Hypothetical protein CBG05061 [Caenorhabditis briggsae] 7.0E-45
blast CAE61255 Hypothetical protein CBG05061 [Caenorhabditis briggsae] 5.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509078.1 4 21-43,104-126,139-161,183-205
T22E5.6 4 21-43,104-126,139-161,183-205
SNAP00000012237 4 21-43,98-120,158-180,200-222
GENEFINDER00000012241 4 21-43,104-126,139-161,183-205
Sequence
Target Sequence 
>C. ELEGANS:183255_AT
gaaacgagaacatcttctgccttccatgggattttgaagataaagcggaaaagtttccag
atccgtttaccaaagtgttggccgcttcaactgttgttcgagtgacattccacattgctc
tggtcatattggcgtttcaaattttctacctcgcatataccattggacactgttgtagcc
agtcatttacagaattgacaaaaaagcgaaaactcgcatttttccatgcaatgctcgttc
cagttggcctttggattattctcctactacttgtactttacgaaacttacactgataatc
ttctcccattgtctctgagaaaagaagattacaaatacaaaatcggatccggcttttggt
ttttcttcctcggtggcctacttccatttattggagcactctacttcttgtttagagagc
agatggatgcatcgaaaactcgtcttagaggacttatcaatcgacatcagccaataccat
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACGAGAACATCTTCTGCCTTCC 705 357 215 Antisense
TTGGCCGCTTCAACTGTTGTTCGAG 550 707 292 Antisense
CGAGTGACATTCCACATTGCTCTGG 3 251 313 Antisense
TTGCTCTGGTCATATTGGCGTTTCA 399 701 329 Antisense
GGCGTTTCAAATTTTCTACCTCGCA 361 541 345 Antisense
CTACCTCGCATATACCATTGGACAC 523 225 360 Antisense
TTTTCCATGCAATGCTCGTTCCAGT 666 675 434 Antisense
GGATTATTCTCCTACTACTTGTACT 415 509 467 Antisense
ACACTGATAATCTTCTCCCATTGTC 699 109 503 Antisense
TATTGGAGCACTCTACTTCTTGTTT 316 665 603 Antisense
CAATCGACATCAGCCAATACCATCA 500 181 672 Antisense
Sequence Source Affymetrix Proprietary Database