[Home] | [Total List]

[183254_at]

Description T26A5.8 /REP_DB=WormBase Gene ID /WP=CE00787 /TR=Q22798 /GB=AAC77511.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 97      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 93      6grp_total > 87      4grp_total > 42      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 278
1 2 3 4 range
A 328.2
(-3)
P 		567.3
(3)
P 		475.6
(0.7)
P 		331.8
(-2.9)
P 		239
B 354.9
(-3)
P 		580.8
(3)
P 		552.5
(2.2)
P 		359.2
(-2.9)
P 		226
C 392.3
(-3)
P 		606.1
(3)
P 		501.5
(0.1)
P 		512.1
(0.4)
P 		214
avr 358.5
(-3) 		584.7
(3) 		509.9
(1) 		401
(-1.9) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 453
1 2 3 4 5 6 range
A 287.6
(-3)
P 		355.6
(-1.9)
P 		319.1
(-2.5)
P 		446.1
(-0.4)
P 		473.7
(0)
P 		654.6
(3)
P 		367
B 296.8
(-2.9)
P 		376.3
(-1.4)
P 		327.2
(-2.3)
P 		290.1
(-3)
P 		474.9
(0.5)
P 		604.3
(3)
P 		314
C 324
(-2.4)
P 		372.2
(-1.8)
P 		278.4
(-3)
P 		496
(-0.1)
P 		531.8
(0.4)
P 		731.7
(3)
P 		453
avr 302.8
(-3) 		368
(-1.9) 		308.2
(-2.9) 		410.7
(-1.2) 		493.5
(0.2) 		663.5
(3) 		361
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 119.5
(2.6)
P 		123.1
(2.9)
P 		124.3
(3)
P 		48.6
(-3)
P 		76
B 113.2
(0.3)
P 		143.5
(3)
P 		128
(1.6)
P 		76.5
(-3)
P 		67
C 129.9
(-0)
P 		174.3
(3)
P 		174.8
(3)
P 		86.3
(-3)
P 		89
avr 120.9
(1) 		147
(3) 		142.4
(2.6) 		70.5
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 53
(-3)
P 		126.5
(1.1)
P 		69.5
(-2.1)
P 		113.1
(0.4)
P 		142.9
(2.1)
P 		159.4
(3)
P 		106
B 103.3
(-1.9)
P 		125.2
(-1)
P 		79.5
(-2.9)
P 		76.8
(-3)
P 		193
(1.7)
P 		225.4
(3)
P 		149
C 120.1
(-1.3)
P 		113.6
(-1.5)
P 		70.9
(-3)
P 		99.7
(-2)
P 		172.1
(0.5)
P 		245
(3)
P 		174
avr 92.1
(-2.2) 		121.8
(-0.9) 		73.3
(-3) 		96.5
(-2) 		169.3
(1.2) 		209.9
(3) 		137
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183254_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6397
Sequence Type Exemplar sequence
Representative Public ID T26A5.8 NCBI
Target Description T26A5.8 /REP_DB=WormBase Gene ID /WP=CE00787 /TR=Q22798 /GB=AAC77511.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066020(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066020 NCBI Caenorhabditis elegans T26A5.8 (T26A5.8) mRNA, complete cds. 11/11 None
SNAP00000033269 ENSEMBL cdna:SNAP chromosome:CEL140:III:6462274:6462784:-1 11/11 None
GENEFINDER00000033290 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6462340:6462784:-1 11/11 None
T26A5.8 ENSEMBL cdna:known chromosome:CEL140:III:6462220:6462784:-1 gene:T26A5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6462272-6462783(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26A5.8
Entrez Gene 175921 Entrez gene
SwissProt Q22798 EMBL-EBI
WormBase CE00787 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498421 T26A5.8 [Caenorhabditis elegans] gb|AAC77511.1| Hypothetical protein T26A5.8 [Caenorhabditis elegans] 5.0E-56
blast NP_498421 T26A5.8 [Caenorhabditis elegans] gb|AAC77511.1| Hypothetical protein T26A5.8 [Caenorhabditis elegans] 4.0E-55
blast CAE72502 Hypothetical protein CBG19681 [Caenorhabditis briggsae] 5.0E-29
Sequence
Target Sequence 
>C. ELEGANS:183254_AT
gccagcagcaattgtgactcggctcatgaaagaagacaatatttctgcatcaaaagatgc
tcgagacgtcatcgctcgtgctgcagcagtgtttctcataaacttgtccgacgtttcggc
tcaatctgctcgcgatcagaagcacaagacgatctcaggagatgatgttgtcaaaggact
ccgagagcttgagaatacttctattcacaatcattgcaagtccgccaacgataaatggaa
agttattagtcagcagaaggctctcgctcgtaaaaatccagttgaatccagctctgtcaa
tgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAGCAGCAATTGTGACTCGGCTC 202 281 66 Antisense
AGATGCTCGAGACGTCATCGCTCGT 496 67 120 Antisense
ATCGCTCGTGCTGCAGCAGTGTTTC 635 37 136 Antisense
GCAGTGTTTCTCATAAACTTGTCCG 657 311 151 Antisense
ACTTGTCCGACGTTTCGGCTCAATC 319 101 167 Antisense
GCTCAATCTGCTCGCGATCAGAAGC 105 303 184 Antisense
AATACTTCTATTCACAATCATTGCA 223 173 259 Antisense
AATCATTGCAAGTCCGCCAACGATA 507 167 274 Antisense
TTAGTCAGCAGAAGGCTCTCGCTCG 242 681 311 Antisense
GGCTCTCGCTCGTAAAAATCCAGTT 86 539 324 Antisense
AGTTGAATCCAGCTCTGTCAATGCT 324 63 345 Antisense
Sequence Source Affymetrix Proprietary Database