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[183253_at]

Description F30B5.3 /REP_DB=WormBase Gene ID /WP=CE04464 /TR=Q19914 /GB=AAA83497.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 25      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 38.7
(1.6)
A 		23.6
(-0.7)
A 		8.8
(-3)
A 		48.1
(3)
A 		39
B 5.5
(-3)
A 		10.2
(-2)
A 		33.1
(3)
A 		11
(-1.8)
A 		28
C 29.3
(-3)
A 		57.2
(3)
A 		49.3
(1.3)
A 		53.3
(2.2)
A 		28
avr 24.5
(-3) 		30.3
(-0.3) 		30.4
(-0.3) 		37.5
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 8.4
(-2.1)
A 		9.5
(-1.9)
A 		17.4
(0.2)
A 		27.9
(2.8)
A 		5
(-3)
A 		28.6
(3)
A 		24
B 13.3
(-3)
A 		18.1
(-2.1)
A 		46.8
(3)
A 		28
(-0.4)
A 		18.2
(-2.1)
A 		24.2
(-1)
A 		34
C 31.7
(0.2)
A 		55
(3)
A 		15.2
(-1.8)
A 		17.5
(-1.5)
A 		5
(-3)
A 		6.8
(-2.8)
A 		50
avr 17.8
(-0.2) 		27.5
(3) 		26.5
(2.7) 		24.5
(2) 		9.4
(-3) 		19.9
(0.5) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 14.1
(3)
A 		5.1
(-1.6)
A 		2.3
(-3)
A 		7
(-0.6)
A 		12
B 1.8
(-3)
A 		2.5
(-2.3)
A 		7.7
(3)
A 		2.3
(-2.5)
A 		6
C 9.7
(-2.5)
A 		16.4
(2.4)
A 		17.2
(3)
A 		9
(-3)
A 		8
avr 8.5
(1.8) 		8
(0.8) 		9.1
(3) 		6.1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.6
(-2.9)
A 		3.4
(-1)
A 		3.8
(-0.5)
A 		7.1
(3)
A 		1.5
(-3)
A 		7
(2.9)
A 		6
B 4.6
(-3)
A 		6
(-1.8)
A 		11.4
(3)
A 		7.4
(-0.5)
A 		7.4
(-0.5)
A 		9
(0.9)
A 		7
C 11.7
(1)
A 		16.8
(3)
A 		3.9
(-2.1)
A 		3.5
(-2.3)
A 		1.6
(-3)
A 		2.3
(-2.7)
A 		15
avr 6
(-0.1) 		8.7
(3) 		6.4
(0.3) 		6
(-0.1) 		3.5
(-3) 		6.1
(0) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183253_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11203
Sequence Type Exemplar sequence
Representative Public ID F30B5.3 NCBI
Target Description F30B5.3 /REP_DB=WormBase Gene ID /WP=CE04464 /TR=Q19914 /GB=AAA83497.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F30B5.3
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F30B5.3 F30B5.3 /REP_DB=WormBase Gene ID /WP=CE04464 /TR=Q19914 /GB=AAA83497.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068116 10/11 Negative Strand Matching Probes A 
SNAP00000023156 10/11 Negative Strand Matching Probes None
GENEFINDER00000023161 10/11 Negative Strand Matching Probes None
F30B5.7 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4229365-4229623(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:183253_AT
tggttaaagtcgttgctcttctcggatgccattatctcgatgaatgtcacgtagataaat
gttccagcggcaagggattcgaggagcaggatggcacagtctttgtaaatgttggtttcc
gagttttggaggatggagcccatgatggagccgagtggggccatgagactgtagatgagg
atggtggcgaggacggttttgacctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTTAAAGTCGTTGCTCTTCTCGG 636 551 14 Antisense
CTCTTCTCGGATGCCATTATCTCGA 39 231 29 Antisense
ATTATCTCGATGAATGTCACGTAGA 672 13 44 Antisense
GTCACGTAGATAAATGTTCCAGCGG 461 465 59 Antisense
GTTCCAGCGGCAAGGGATTCGAGGA 2 441 74 Antisense
GGAGCAGGATGGCACAGTCTTTGTA 550 519 96 Antisense
TGTAAATGTTGGTTTCCGAGTTTTG 212 559 117 Antisense
CCGAGTTTTGGAGGATGGAGCCCAT 283 261 132 Antisense
TGGAGCCCATGATGGAGCCGAGTGG 644 547 147 Antisense
GAGCCGAGTGGGGCCATGAGACTGT 181 385 161 Antisense
GTGGCGAGGACGGTTTTGACCTGGA 35 491 197 Antisense
Sequence Source Affymetrix Proprietary Database