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[183249_s_at]

Description K02E7.5 /REP_DB=WormBase Gene ID /WP=CE11630 /TR=O17254 /GB=AAB71026.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 44.2
(0)
A 		38.1
(-0.5)
A 		8.9
(-3)
A 		78.6
(3)
A 		70
B 44.1
(3)
A 		6.2
(-3)
A 		11.8
(-2.1)
A 		25.1
(-0)
A 		38
C 62
(1.2)
A 		16.8
(-2.7)
A 		13.1
(-3)
A 		82.6
(3)
A 		70
avr 50.1
(1.6) 		20.4
(-1.9) 		11.3
(-3) 		62.1
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 10.6
(-2.2)
A 		16.2
(-1.6)
A 		55.8
(3)
A 		3.9
(-3)
A 		7.7
(-2.6)
A 		23.1
(-0.8)
A 		52
B 34.4
(1.5)
A 		11.1
(-3)
A 		42.2
(3)
A 		15
(-2.2)
A 		21.5
(-1)
A 		16.3
(-2)
A 		31
C 8
(-2.4)
A 		50.9
(3)
A 		4.2
(-2.9)
A 		22.9
(-0.5)
A 		3.4
(-3)
A 		31.7
(0.6)
A 		48
avr 17.7
(-1.2) 		26.1
(0.9) 		34.1
(3) 		13.9
(-2.2) 		10.9
(-3) 		23.7
(0.3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 16.1
(3)
A 		8.3
(-0.4)
A 		2.3
(-3)
A 		11.5
(1)
A 		14
B 14.1
(3)
A 		1.5
(-3)
A 		2.7
(-2.4)
A 		5.3
(-1.2)
A 		13
C 20.5
(3)
A 		4.8
(-2.9)
A 		4.6
(-3)
A 		13.9
(0.5)
A 		16
avr 16.9
(3) 		4.9
(-2.3) 		3.2
(-3) 		10.2
(0.1) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2
(-2.5)
A 		5.8
(-0.4)
A 		12.2
(3)
A 		1
(-3)
A 		2.3
(-2.3)
A 		5.6
(-0.5)
A 		11
B 12
(3)
A 		3.7
(-3)
A 		10.2
(1.7)
A 		4
(-2.8)
A 		8.7
(0.6)
A 		6.1
(-1.3)
A 		8
C 3
(-2.2)
A 		15.5
(3)
A 		1.1
(-3)
A 		4.6
(-1.5)
A 		1.1
(-3)
A 		10.6
(1)
A 		14
avr 5.7
(-0.1) 		8.3
(3) 		7.8
(2.4) 		3.2
(-3) 		4
(-2.1) 		7.4
(1.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183249_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5984
Sequence Type Exemplar sequence
Representative Public ID K02E7.5 NCBI
Target Description K02E7.5 /REP_DB=WormBase Gene ID /WP=CE11630 /TR=O17254 /GB=AAB71026.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061502
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000023025 ENSEMBL cdna:SNAP chromosome:CEL140:II:1062328:1064132:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061490 2/11 Cross Hyb Matching Probes None
NM_061502 8/11 Cross Hyb Matching Probes None
GENEFINDER00000029296 1/11 Cross Hyb Matching Probes None
M01D1.2 2/11 Cross Hyb Matching Probes A 
K02E7.5 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1062028-1063671(+) 86.5 88.05
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70998 Hypothetical protein M01D1.2 [Caenorhabditis elegans] ref|NP_493891.3| M01D1.2 [Caenorhabditis elegans] 1.0E-115
blast B88035 protein M01D1.2 [imported] - Caenorhabditis elegans 1.0E-115
blast AAB71026 Hypothetical protein K02E7.5 [Caenorhabditis elegans] ref|NP_493903.2| K02E7.5 [Caenorhabditis elegans] 6.0E-61
Sequence
Target Sequence 
>C. ELEGANS:183249_S_AT
gttttgacattcctcagtttgtaaaaatatcaatgcacggtcaccataacctcgacagac
tagttcttaagccaactcttctattcaccctggaagaccttctctcatgcggcagctctt
gtataaaaatcccgaacacttcaccgttcaccgataaggatttcaacctgttcatgaagc
attggatacgaggatccaacccgaaccttgagtatctcacaatcagtgcgacaactgatt
tgagaggtcatttaatgacttactggcatttactgaaaaggattaattttcacgatggac
cgaatccgggggctcttcgtggcacctaccggatcaatgggcatagtggaagttaccact
ggaaacatgagaaaattgtggagtttaagggtggcgtagatgttaaaaaatcggatggaa
cgatagctacgatagttatatggacagatggccgtggcagggagcccttcacttttgaga
tgagagtttggcggtatgatgaattagttcaaaaaaattttaatttggcaccagaatttt
ttcgtctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTGACATTCCTCAGTTTGTAAA 33 449 224 Antisense
AAAAATATCAATGCACGGTCACCAT 398 129 246 Antisense
GTATCTCACAATCAGTGCGACAACT 93 455 435 Antisense
ATGACTTACTGGCATTTACTGAAAA 531 43 478 Antisense
TCACGATGGACCGAATCCGGGGGCT 625 611 513 Antisense
GGCACCTACCGGATCAATGGGCATA 323 533 544 Antisense
TATATGGACAGATGGCCGTGGCAGG 277 661 660 Antisense
GGACAGATGGCCGTGGCAGGGAGCC 119 525 665 Antisense
GGAGCCCTTCACTTTTGAGATGAGA 23 523 684 Antisense
GATGAGAGTTTGGCGGTATGATGAA 607 411 702 Antisense
TTGGCACCAGAATTTTTTCGTCTGA 123 709 748 Antisense
Sequence Source Affymetrix Proprietary Database