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[183248_at]

Description R05A10.4 /REP_DB=WormBase Gene ID /WP=CE16290 /TR=O45700 /GB=CAB05264.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_high_8_8 > 10      6grp_highest_nonorm > 31      6grp_total > 02      4grp_total > 22      6grp_highest_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 861
1 2 3 4 range
A 922.2
(3)
P 		375.2
(-1.9)
P 		251.9
(-3)
A 		808.8
(2)
P 		670
B 859.6
(2.1)
P 		386.3
(-2.2)
P 		300.1
(-3)
P 		961.3
(3)
P 		661
C 995.8
(2.2)
P 		448.4
(-1.8)
P 		283.9
(-3)
P 		1113
(3)
P 		829
avr 925.9
(2.7) 		403.3
(-1.9) 		278.6
(-3) 		961
(3) 		682

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 915
1 2 3 4 5 6 range
A 707.7
(-1.3)
P 		1207.8
(3)
P 		1017.7
(1.4)
P 		926.4
(0.6)
P 		710.8
(-1.3)
P 		512.9
(-3)
P 		695
B 975.5
(2)
P 		1054.7
(3)
P 		589
(-2.6)
P 		558.9
(-3)
P 		734.3
(-0.9)
P 		570.4
(-2.9)
P 		496
C 1294.5
(3)
P 		983.3
(1)
P 		682
(-1)
P 		824.7
(-0.1)
P 		933.7
(0.6)
P 		379.1
(-3)
P 		915
avr 992.6
(2.1) 		1081.9
(3) 		762.9
(-0.2) 		770
(-0.1) 		792.9
(0.1) 		487.5
(-3) 		594
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 270
1 2 3 4 range
A 335.8
(3)
P 		81.4
(-2.7)
P 		65.9
(-3)
A 		118.4
(-1.8)
P 		270
B 274.1
(3)
P 		95.4
(-2.2)
P 		69.5
(-3)
P 		204.9
(1)
P 		205
C 329.6
(3)
P 		128.9
(-2.2)
P 		98.9
(-3)
P 		187.7
(-0.7)
P 		231
avr 313.2
(3) 		101.9
(-2.4) 		78.1
(-3) 		170.3
(-0.6) 		235

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 355
1 2 3 4 5 6 range
A 130.5
(-2.9)
P 		429.6
(3)
P 		221.6
(-1.1)
P 		235
(-0.8)
P 		214.5
(-1.2)
P 		124.9
(-3)
P 		305
B 339.4
(2.7)
P 		351.1
(3)
P 		143
(-3)
P 		148
(-2.9)
P 		298.3
(1.5)
P 		212.7
(-1)
P 		208
C 479.8
(3)
P 		300
(-0.1)
P 		173.6
(-2.2)
P 		165.9
(-2.3)
P 		302.1
(-0)
P 		126.9
(-3)
P 		353
avr 316.6
(1.7) 		360.2
(3) 		179.4
(-2.3) 		183
(-2.2) 		271.6
(0.4) 		154.8
(-3) 		205
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183248_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8635
Sequence Type Exemplar sequence
Representative Public ID R05A10.4 NCBI
Target Description R05A10.4 /REP_DB=WormBase Gene ID /WP=CE16290 /TR=O45700 /GB=CAB05264.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070317(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070317 NCBI Caenorhabditis elegans R05A10.4 (R05A10.4) mRNA, complete cds. 11/11 None
R05A10.4 ENSEMBL cdna:known chromosome:CEL140:IV:14172470:14173077:1 gene:R05A10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012482 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14172475-14173083(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05A10.4
Entrez Gene 187595 Entrez gene
SwissProt O45700 EMBL-EBI
WormBase CE16290 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05264 Hypothetical protein R05A10.4 [Caenorhabditis elegans] ref|NP_502718.1| R05A10.4 [Caenorhabditis elegans] 2.0E-48
blast CAE18007 Hypothetical protein Y45F10B.15 [Caenorhabditis elegans] ref|NP_001023469.1| Y45F10B.15 [Caenorhabditis elegans] 2.0E-14
blast CAE74578 Hypothetical protein CBG22343 [Caenorhabditis briggsae] 3.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR009981 EMBL-EBI Protein of unknown function DUF1505 2.9E-70
Sequence
Target Sequence 
>C. ELEGANS:183248_AT
gaatctttcaattttctctgctataatattttcaattactattgcaagttcggcaatccc
aatctctgaaaattacgtatcctggagctctgactcgaattgtctggactttgatgatag
tcgtgatccgaatgccgtctgtgaggcaactacaacttggaagcgatctgaaaattcttc
ttgcattgtttcggtatactatgtcaaaaaggaaaagtcgtctggaacatcaaatggaat
accccaatgctcaaagacaccatgcgacgccaccgaaaaaatagtcgtcgattgtgaaac
tgcattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCTTTCAATTTTCTCTGCTATA 39 329 15 Antisense
CAAGTTCGGCAATCCCAATCTCTGA 104 181 59 Antisense
ATTACGTATCCTGGAGCTCTGACTC 288 13 86 Antisense
GAGCTCTGACTCGAATTGTCTGGAC 4 389 99 Antisense
TAGTCGTGATCCGAATGCCGTCTGT 578 653 132 Antisense
GCCGTCTGTGAGGCAACTACAACTT 561 283 148 Antisense
AATTCTTCTTGCATTGTTTCGGTAT 355 175 187 Antisense
TCAAATGGAATACCCCAATGCTCAA 289 629 244 Antisense
AATGCTCAAAGACACCATGCGACGC 192 167 260 Antisense
ACCATGCGACGCCACCGAAAAAATA 671 85 273 Antisense
AGTCGTCGATTGTGAAACTGCATTC 543 59 297 Antisense
Sequence Source Affymetrix Proprietary Database