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[183247_at]

Description C26F1.3 /REP_DB=WormBase Gene ID /WP=CE06877 /TR=Q18232 /GB=AAB37075.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 67      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 97      6grp_total > 67      4grp_total > 11      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 767
1 2 3 4 range
A 845
(-2.7)
P 		1138.8
(0.2)
P 		809.1
(-3)
P 		1436.2
(3)
P 		627
B 1067.1
(-1.9)
P 		955.7
(-3)
P 		982.1
(-2.7)
P 		1576
(3)
P 		620
C 1048.6
(0.1)
P 		885.9
(-3)
P 		914.7
(-2.4)
P 		1196.2
(3)
P 		310
avr 986.9
(-2) 		993.5
(-1.9) 		902
(-3) 		1402.8
(3) 		501

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 712
1 2 3 4 5 6 range
A 1213.7
(0.8)
P 		919.3
(-1.9)
P 		942.1
(-1.7)
P 		799
(-3)
P 		1007.6
(-1.1)
P 		1453.7
(3)
P 		655
B 919.2
(-2.3)
P 		870.7
(-2.8)
P 		1062.3
(-0.9)
P 		848.1
(-3)
P 		945.5
(-2)
P 		1458
(3)
P 		610
C 784.9
(-2.9)
P 		837.9
(-2.5)
P 		774.2
(-3)
P 		1063.4
(-0.6)
P 		951.7
(-1.5)
P 		1486.1
(3)
P 		712
avr 972.6
(-2) 		876
(-3) 		926.2
(-2.5) 		903.5
(-2.7) 		968.3
(-2.1) 		1465.9
(3) 		590
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 307.7
(3)
P 		247.2
(-0.7)
P 		211.5
(-2.9)
P 		210.2
(-3)
P 		98
B 340.3
(3)
P 		236
(-2.6)
P 		227.6
(-3)
P 		335.8
(2.8)
P 		113
C 347.1
(3)
P 		254.7
(-0.8)
P 		318.8
(1.8)
P 		201.7
(-3)
P 		145
avr 331.7
(3) 		246
(-3) 		252.6
(-2.5) 		249.2
(-2.8) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 347
1 2 3 4 5 6 range
A 223.7
(-2.2)
P 		326.9
(1.9)
P 		205.2
(-2.9)
P 		202.7
(-3)
P 		304.1
(1)
P 		353.9
(3)
P 		151
B 319.8
(-1.2)
P 		289.8
(-1.8)
P 		258
(-2.4)
P 		224.6
(-3)
P 		384.1
(-0)
P 		543.7
(3)
P 		319
C 290.9
(-1.1)
P 		255.7
(-1.8)
P 		197
(-3)
P 		213.9
(-2.7)
P 		308
(-0.8)
P 		497.5
(3)
P 		301
avr 278.1
(-1.5) 		290.8
(-1.2) 		220.1
(-2.8) 		213.7
(-3) 		332.1
(-0.2) 		465
(3) 		251
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183247_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11339
Sequence Type Exemplar sequence
Representative Public ID C26F1.3 NCBI
Target Description C26F1.3 /REP_DB=WormBase Gene ID /WP=CE06877 /TR=Q18232 /GB=AAB37075.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072607(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072607 NCBI Caenorhabditis elegans C26F1.3 (C26F1.3) mRNA, complete cds. 11/11 None
SNAP00000018571 ENSEMBL cdna:SNAP chromosome:CEL140:V:7779892:7781433:1 11/11 None
GENEFINDER00000018584 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7779892:7781433:1 11/11 None
C26F1.3 ENSEMBL cdna:known chromosome:CEL140:V:7779892:7781518:1 gene:C26F1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7779892-7781434(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26F1.3
Entrez Gene 179155 Entrez gene
SwissProt Q18232 EMBL-EBI
WormBase CE06877 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37075 Hypothetical protein C26F1.3 [Caenorhabditis elegans] ref|NP_505008.1| C26F1.3 [Caenorhabditis elegans] gb|AAG50206.1| 5I259 [Caenorhabditis elegans] sp|Q18232|YBRI_CAEEL Hypothetical protein C26F1.3 in chromosome IV 2.0E-98
blast CAE73189 Hypothetical protein CBG20588 [Caenorhabditis briggsae] 2.0E-89
Sequence
Target Sequence 
>C. ELEGANS:183247_AT
agagtgctgctagacgagataacgtcaaaaccatattgcacgccgcttcaaagggacaag
ttcaattatctgcagaagagagctatatagttcaaaagccgagcacttcaaaaggatccg
actacatcgatgatcgattagcttcacaaggattttcgttgattgatcaagcccgctcat
tcaaaccaaaggatctgaagaagagaaatttgaaatacatgaaattccaagaaggtcgtc
gtattgacaagaaaaaaggacgaatcctagttcaagcacatatgcaaacaaagcaggatc
tgaaaagtcttcggaaggagaaaaaggctattatcggagtaaaagaaccacgtcgattgt
tgcctggccagaagaagaaacagaaagacaagagtgtgttcagtgatgccgattttgctc
aagttgcccatgttgccaagagaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGTGCTGCTAGACGAGATAACGT 217 69 98 Antisense
CGTCAAAACCATATTGCACGCCGCT 547 245 120 Antisense
CACGCCGCTTCAAAGGGACAAGTTC 436 199 136 Antisense
GCCGAGCACTTCAAAAGGATCCGAC 196 285 195 Antisense
GGATCCGACTACATCGATGATCGAT 466 513 211 Antisense
TTGATTGATCAAGCCCGCTCATTCA 17 707 256 Antisense
AGCCCGCTCATTCAAACCAAAGGAT 446 83 267 Antisense
AAAAGAACCACGTCGATTGTTGCCT 97 131 438 Antisense
GTGTTCAGTGATGCCGATTTTGCTC 544 485 493 Antisense
CGATTTTGCTCAAGTTGCCCATGTT 171 249 507 Antisense
AGTTGCCCATGTTGCCAAGAGAATC 74 65 519 Antisense
Sequence Source Affymetrix Proprietary Database