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[183246_at]

Description F55D1.2 /REP_DB=WormBase Gene ID /WP=CE07276 /TR=Q20824 /GB=AAA93412.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 70.3
(-1.2)
A 		38.3
(-3)
A 		104.3
(0.6)
A 		147.8
(3)
P 		110
B 45.4
(-3)
A 		100.8
(1.4)
A 		120.5
(3)
A 		54.3
(-2.3)
A 		75
C 76.4
(-1.1)
A 		88.7
(0)
P 		55
(-3)
P 		121.8
(3)
P 		67
avr 64
(-3) 		75.9
(-1.4) 		93.3
(1) 		108
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 96.7
(3)
A 		69.9
(-0.4)
A 		78.5
(0.7)
A 		48.7
(-3)
A 		73.8
(0.1)
A 		70.4
(-0.3)
P 		48
B 80.6
(1.7)
A 		69
(0.9)
A 		58.3
(0.2)
A 		98.7
(3)
A 		50.3
(-0.3)
A 		12
(-3)
A 		87
C 44.9
(-2.9)
A 		130.4
(3)
A 		87.1
(0)
A 		113.1
(1.8)
A 		70.3
(-1.1)
A 		43.1
(-3)
A 		87
avr 74.1
(1) 		89.8
(3) 		74.6
(1.1) 		86.8
(2.6) 		64.8
(-0.1) 		41.8
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 25.6
(2.5)
A 		8.3
(-3)
A 		27.3
(3)
A 		21.6
(1.2)
P 		19
B 14.5
(-1.9)
A 		24.9
(1.9)
A 		27.9
(3)
A 		11.6
(-3)
A 		16
C 25.3
(2.8)
A 		25.5
(3)
P 		19.2
(-3)
P 		20.5
(-1.8)
P 		6
avr 21.8
(0.4) 		19.6
(-1.5) 		24.8
(3) 		17.9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 17.8
(-0.4)
A 		24.9
(3)
A 		17.1
(-0.7)
A 		12.3
(-3)
A 		22.3
(1.8)
A 		17.1
(-0.7)
P 		13
B 28
(3)
A 		23
(1.7)
A 		14.2
(-0.5)
A 		26.2
(2.5)
A 		20.4
(1.1)
A 		4.5
(-3)
A 		24
C 16.6
(-2.5)
A 		39.8
(3)
A 		22.2
(-1.2)
A 		22.7
(-1)
A 		22.8
(-1)
A 		14.4
(-3)
A 		25
avr 20.8
(0.1) 		29.2
(3) 		17.8
(-1) 		20.4
(-0.1) 		21.8
(0.4) 		12
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183246_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16430
Sequence Type Exemplar sequence
Representative Public ID F55D1.2 NCBI
Target Description F55D1.2 /REP_DB=WormBase Gene ID /WP=CE07276 /TR=Q20824 /GB=AAA93412.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076529(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076529 NCBI Caenorhabditis elegans F55D1.2 (F55D1.2) mRNA, complete cds. 11/11 None
GENEFINDER00000032881 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5488803:5490077:1 11/11 None
SNAP00000032880 ENSEMBL cdna:SNAP chromosome:CEL140:X:5488866:5489075:1 9/11 None
F55D1.2 ENSEMBL cdna:known chromosome:CEL140:X:5488741:5489075:1 gene:F55D1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5488740-5489075(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55D1.2
Entrez Gene 186305 Entrez gene
SwissProt Q20824 EMBL-EBI
WormBase CE07276 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93412 Hypothetical protein F55D1.2 [Caenorhabditis elegans] ref|NP_508930.1| F55D1.2 [Caenorhabditis elegans] 6.0E-46
blast AAA93412 Hypothetical protein F55D1.2 [Caenorhabditis elegans] ref|NP_508930.1| F55D1.2 [Caenorhabditis elegans] 1.0E-43
blast AAA93413 Hypothetical protein F55D1.1 [Caenorhabditis elegans] ref|NP_508931.1| F55D1.1 [Caenorhabditis elegans] 1.0E-40
blast AAA93412 Hypothetical protein F55D1.2 [Caenorhabditis elegans] ref|NP_508930.1| F55D1.2 [Caenorhabditis elegans] 6.0E-33
Sequence
Target Sequence 
>C. ELEGANS:183246_AT
aagtgaaatcacggtttggttaatgagtgtcttcctccgctgctacctgtcgggaaaaga
agaaagaccgataacctacgattcttcaggatcgcccagagaagtcatcgatgaccgtgc
cttgatgcttatcgtgctccaaaggcgctgtcgctttcacttgactcttatagcgtcctc
gtttttcattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGAAATCACGGTTTGGTTAATG 436 49 60 Antisense
TTGGTTAATGAGTGTCTTCCTCCGC 231 707 75 Antisense
CTCCGCTGCTACCTGTCGGGAAAAG 160 235 94 Antisense
AGACCGATAACCTACGATTCTTCAG 250 71 124 Antisense
AACCTACGATTCTTCAGGATCGCCC 92 147 132 Antisense
CAGGATCGCCCAGAGAAGTCATCGA 329 209 146 Antisense
GTCATCGATGACCGTGCCTTGATGC 403 467 163 Antisense
CCTTGATGCTTATCGTGCTCCAAAG 2 271 179 Antisense
GTCGCTTTCACTTGACTCTTATAGC 291 475 209 Antisense
CACTTGACTCTTATAGCGTCCTCGT 235 197 217 Antisense
TTATAGCGTCCTCGTTTTTCATTCT 465 679 227 Antisense
Sequence Source Affymetrix Proprietary Database