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[183245_at]

Description T07A9.8 /REP_DB=WormBase Gene ID /WP=CE17217 /TR=O44410 /GB=AAK39280.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 82      6grp_total > 49      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 968
1 2 3 4 range
A 626.7
(-1.4)
P 		461.1
(-2.5)
P 		376.7
(-3)
P 		1327.7
(3)
P 		951
B 490.9
(-2.1)
P 		416.1
(-2.6)
P 		359.5
(-3)
P 		1223.7
(3)
P 		864
C 627.3
(-1.7)
P 		496.5
(-2.8)
P 		476.6
(-3)
P 		1150.3
(3)
P 		674
avr 581.6
(-1.7) 		457.9
(-2.6) 		404.3
(-3) 		1233.9
(3) 		830

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 453.6
(3)
P 		336.1
(-2.4)
P 		322.1
(-3)
P 		391.7
(0.2)
P 		406.5
(0.9)
P 		407.7
(0.9)
P 		132
B 530.9
(3)
P 		315.3
(-2.5)
P 		326.7
(-2.2)
P 		297.5
(-3)
P 		515.1
(2.6)
P 		457.9
(1.1)
P 		233
C 411
(0.9)
P 		354.2
(-0.6)
P 		267.6
(-3)
P 		391.4
(0.4)
P 		403.5
(0.7)
P 		486.8
(3)
P 		219
avr 465.2
(3) 		335.2
(-1.9) 		305.5
(-3) 		360.2
(-0.9) 		441.7
(2.1) 		450.8
(2.5) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 228.2
(3)
P 		100.1
(-2.9)
P 		98.5
(-3)
P 		194.4
(1.4)
P 		130
B 156.5
(-0.5)
P 		102.8
(-2.3)
P 		83.3
(-3)
P 		260.8
(3)
P 		178
C 207.6
(3)
P 		142.7
(-3)
P 		166.1
(-0.8)
P 		194
(1.7)
P 		65
avr 197.4
(1.9) 		115.2
(-3) 		116
(-3) 		216.4
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 83.6
(-1.5)
P 		119.5
(2.6)
P 		70.1
(-3)
P 		99.3
(0.3)
P 		122.7
(3)
P 		99.3
(0.3)
P 		53
B 184.7
(1.9)
P 		105
(-1.8)
P 		79.3
(-3)
P 		78.8
(-3)
P 		209.3
(3)
P 		170.8
(1.2)
P 		131
C 152.4
(2.3)
P 		108.1
(-0.5)
P 		68.1
(-3)
P 		78.7
(-2.3)
P 		130.6
(1)
P 		163
(3)
P 		95
avr 140.2
(2) 		110.9
(-0.2) 		72.5
(-3) 		85.6
(-2) 		154.2
(3) 		144.4
(2.3) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183245_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10993
Sequence Type Exemplar sequence
Representative Public ID T07A9.8 NCBI
Target Description T07A9.8 /REP_DB=WormBase Gene ID /WP=CE17217 /TR=O44410 /GB=AAK39280.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067519(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067519 NCBI Caenorhabditis elegans T07A9.8 (T07A9.8) mRNA, complete cds. 11/11 None
SNAP00000017762 ENSEMBL cdna:SNAP chromosome:CEL140:IV:396545:400883:1 11/11 None
GENEFINDER00000017772 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:396545:398920:1 11/11 None
T07A9.8 ENSEMBL cdna:known chromosome:CEL140:IV:396545:399027:1 gene:T07A9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:396544-398920(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07A9.8
Entrez Gene 176864 Entrez gene
SwissProt O44410 EMBL-EBI
WormBase CE17217 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249360_AT expressed protein at
CANINE:1593037_AT similar to T07A9.8 cfa
CANINE_2:CFAAFFX.10677.1.S1_AT similar to T07A9.8 cfa
DROSOPHILA_2:1638539_AT dm
DROSGENOME1:153734_AT dm
HG-U133_PLUS_2:203171_S_AT KIAA0409 protein hs
HG-U133A_2:203171_S_AT KIAA0409 protein hs
HG-U133A:203171_S_AT KIAA0409 protein hs
HU35KSUBA:RC_AA280105_S_AT KIAA0409 protein hs
HU35KSUBD:RC_R10831_AT KIAA0409 protein hs
U133_X3P:G12758124_3P_A_AT KIAA0409 protein hs
U133_X3P:HS.5158.0.S2_3P_X_AT KIAA0409 protein hs
U133_X3P:HS.5158.0.S2_3P_AT KIAA0409 protein hs
HG-U133A_2:203170_AT KIAA0409 protein hs
HG-U133_PLUS_2:203170_AT KIAA0409 protein hs
HG-U133A:203170_AT KIAA0409 protein hs
HG-U95AV2:36087_AT KIAA0409 protein hs
HU35KSUBB:RC_R51248_AT KIAA0409 protein hs
MG-U74BV2:111915_AT RIKEN cDNA 1500003O22 gene mm
MOE430A:1416559_AT RIKEN cDNA 1500003O22 gene mm
MOUSE430A_2:1416559_AT RIKEN cDNA 1500003O22 gene mm
MOUSE430_2:1416559_AT RIKEN cDNA 1500003O22 gene mm
MU19KSUBB:TC30905_AT RIKEN cDNA 1500003O22 gene (1500003O22Rik), mRNA mm
MU19KSUBC:TC41320_AT RIKEN cDNA 1500003O22 gene (1500003O22Rik), mRNA mm
RG-U34C:RC_AI177038_AT similar to RIKEN cDNA 1500003O22 (predicted) rn
RAE230A:1376681_AT similar to RIKEN cDNA 1500003O22 (predicted) rn
RAT230_2:1376681_AT similar to RIKEN cDNA 1500003O22 (predicted) rn
YEAST_2:1771710_AT Protein involved in rRNA processing; involved in pre-rRNA cleavage at site A2; mutation is synthetically lethal with a gar1 mutation Sc
Protein Similarities
Method ID Description E-Value
blast AAK39280 Hypothetical protein T07A9.8 [Caenorhabditis elegans] ref|NP_499920.1| T07A9.8 [Caenorhabditis elegans] 1.0E-157
blast AAK39280 Hypothetical protein T07A9.8 [Caenorhabditis elegans] ref|NP_499920.1| T07A9.8 [Caenorhabditis elegans] 1.0E-152
blast CAE67896 Hypothetical protein CBG13492 [Caenorhabditis briggsae] 1.0E-119
blast CAE67896 Hypothetical protein CBG13492 [Caenorhabditis briggsae] 1.0E-115
blast XP_629375 hypothetical protein DDB0219795 [Dictyostelium discoideum] gb|EAL61029.1| hypothetical protein DDB0219795 [Dictyostelium discoideum] 7.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR007823 EMBL-EBI Protein of unknown function DUF691 1.0E-126
Pfam IPR007823 EMBL-EBI Protein of unknown function DUF691 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183245_AT
gacgcgggacgattcagatttctgaacgaaaaactctatacatgtactggttctgaagca
tttgatttcttcaaggaggatccgacggcttttgatctatatcacaagggatttgctgat
caggtaaaaaaatggccaaatcacccactccgcgagattatccgctggcttcaatccaaa
ccggatcaacaatcagtattcgatttgggttgtggagaggctaaaattgcagaagccgtt
ggagaaaagcataagattcgctcattcgatttggttgcagtgaatgatcgtgttgagtcg
tgcgatatgtcgaaacttccagctgaagattcatcagctgatattgttatttattgccta
tcactgatgggaacaaatctttatgattttattcgagaagctcgaagagttcttaaaatt
ggaggaattctcaaaatcgcagaagtcacatctcgtttcgtgtcaatcaaacaattttgc
gaggcgatcacaaaaatgggattcgagcaatcacaccgtcgtgagctaaccgattacttc
at

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCGGGACGATTCAGATTTCTGA 20 381 415 Antisense
GGAGGATCCGACGGCTTTTGATCTA 430 515 489 Antisense
CACTCCGCGAGATTATCCGCTGGCT 172 199 560 Antisense
TCCGCTGGCTTCAATCCAAACCGGA 66 595 575 Antisense
TCGCTCATTCGATTTGGTTGCAGTG 24 601 672 Antisense
GTGAATGATCGTGTTGAGTCGTGCG 565 479 694 Antisense
GCGATATGTCGAAACTTCCAGCTGA 436 289 716 Antisense
TGTTATTTATTGCCTATCACTGATG 525 561 759 Antisense
AGAAGTCACATCTCGTTTCGTGTCA 28 75 855 Antisense
TCGAGCAATCACACCGTCGTGAGCT 155 601 917 Antisense
GTCGTGAGCTAACCGATTACTTCAT 211 473 932 Antisense
Sequence Source Affymetrix Proprietary Database