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[183244_at]

Description F58E10.1 /REP_DB=WormBase Gene ID /WP=CE18783 /TR=Q9XUW6 /GB=CAB04517.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 24      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 52      6grp_total > 02      4grp_total > 46      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 669
1 2 3 4 range
A 878.4
(3)
P 		566.1
(-0.1)
P 		358.3
(-2.2)
P 		281.7
(-3)
P 		597
B 782.5
(3)
P 		390.1
(-2.1)
P 		318.4
(-3)
P 		352
(-2.6)
P 		464
C 844.8
(3)
P 		455.4
(-0.7)
P 		414.6
(-1.1)
P 		209.5
(-3)
P 		635
avr 835.2
(3) 		470.5
(-0.9) 		363.8
(-2.1) 		281.1
(-3) 		554

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 440
1 2 3 4 5 6 range
A 593.7
(-2.2)
P 		841.9
(3)
P 		574.7
(-2.6)
P 		561.1
(-2.9)
P 		686.5
(-0.3)
P 		555.8
(-3)
P 		286
B 689.4
(0.3)
P 		888.2
(3)
P 		574.8
(-1.3)
P 		681.2
(0.2)
P 		501.7
(-2.3)
P 		448.6
(-3)
P 		440
C 708.5
(3)
P 		686.3
(2.2)
P 		645
(0.8)
P 		562.3
(-2)
P 		586.8
(-1.2)
P 		534.6
(-3)
P 		174
avr 663.9
(0.1) 		805.5
(3) 		598.2
(-1.3) 		601.5
(-1.2) 		591.7
(-1.4) 		513
(-3) 		293
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 319.8
(3)
P 		122.9
(-1.2)
P 		93.7
(-1.9)
P 		41.2
(-3)
P 		279
B 249.5
(3)
P 		96.3
(-2.2)
P 		73.8
(-3)
P 		75
(-3)
P 		176
C 279.6
(3)
P 		130.9
(-0.7)
P 		144.5
(-0.3)
P 		35.3
(-3)
P 		244
avr 283
(3) 		116.7
(-1.3) 		104
(-1.6) 		50.5
(-3) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 109.5
(-3)
P 		299.4
(3)
P 		125.2
(-2.5)
P 		142.3
(-2)
P 		207.1
(0.1)
P 		135.3
(-2.2)
P 		190
B 239.9
(0.9)
P 		295.7
(3)
P 		139.6
(-3)
P 		180.4
(-1.4)
P 		203.8
(-0.5)
P 		167.3
(-1.9)
P 		156
C 262.6
(3)
P 		209.4
(0.9)
P 		164.2
(-0.9)
P 		113.1
(-3)
P 		189.9
(0.1)
P 		179
(-0.4)
P 		150
avr 204
(-0.1) 		268.2
(3) 		143
(-3) 		145.3
(-2.9) 		200.3
(-0.3) 		160.5
(-2.2) 		125
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183244_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14581
Sequence Type Exemplar sequence
Representative Public ID F58E10.1 NCBI
Target Description F58E10.1 /REP_DB=WormBase Gene ID /WP=CE18783 /TR=Q9XUW6 /GB=CAB04517.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074075(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074075 NCBI Caenorhabditis elegans F58E10.1 (F58E10.1) mRNA, complete cds. 9/11 None
F58E10.1 ENSEMBL cdna:known chromosome:CEL140:V:13989761:14004985:-1 gene:F58E10.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001484 6/11 Cross Hyb Matching Probes None
SNAP00000001485 1/11 Cross Hyb Matching Probes None
SNAP00000001487 2/11 Cross Hyb Matching Probes None
GENEFINDER00000001493 4/11 Cross Hyb Matching Probes None
GENEFINDER00000001494 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13990277-14004985(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58E10.1
Entrez Gene 179894 Entrez gene
SwissProt Q9XUW6 EMBL-EBI
WormBase CE30677 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04517 Hypothetical protein F58E10.1 [Caenorhabditis elegans] ref|NP_506476.2| F58E10.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183244_AT
tattcatgcgatcggctctttatcacaaatgttcacttcttcgcgacgccacgtggtcga
ttattgaaaagaataacctatgttgcgttgtatgttcttcgtttttagcttttcgctttt
tggcaagaagagcccgtgacgtaaacaagacctcacacgaagaatactttatgagttgta
tgggtgatgttggacgcgcacggcgatcaactcttcagggctcatttatttactgtttaa
aagcatcaactgattcgttatccggacttgaagaagatcaccataaagcctaccaagtgt
tgatggttctcgaagcgaagagagcgtatgacgaacgacttgctggacttttctgtgaag
attggttcaatgtggacagtcctgcagacattttcaagattctcgttgaccgaggagatg
acgatttacctccaaagattctctggaacattctctgccgaatcagtggcgtctccatcg
aaatcattgatgcccgtggactatccgaacatccaaaaatcaatcgtttttctgcatcag
catcacctatatctgcgccttgtctaacatggctacgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCATGCGATCGGCTCTTTATCA 579 663 1631 Antisense
TTCGCGACGCCACGTGGTCGATTAT 463 693 1670 Antisense
TGTTCTTCGTTTTTAGCTTTTCGCT 213 561 1723 Antisense
GATCAACTCTTCAGGGCTCATTTAT 336 421 1835 Antisense
GACGAACGACTTGCTGGACTTTTCT 628 379 1960 Antisense
TCTCTGGAACATTCTCTGCCGAATC 515 611 2070 Antisense
GAATCAGTGGCGTCTCCATCGAAAT 47 329 2090 Antisense
ATTGATGCCCGTGGACTATCCGAAC 644 3 2116 Antisense
AATCAATCGTTTTTCTGCATCAGCA 218 171 2148 Antisense
GCATCAGCATCACCTATATCTGCGC 349 309 2164 Antisense
GCGCCTTGTCTAACATGGCTACGCC 672 287 2185 Antisense
Sequence Source Affymetrix Proprietary Database