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[183243_at]

Description T07C12.1 /REP_DB=WormBase Gene ID /WP=CE16369 /TR=Q22283 /GB=CAA98289.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 08      6grp_cgc > 40      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 42.5
(-2.5)
A 		34.9
(-3)
A 		50.9
(-2)
A 		133.6
(3)
P 		99
B 19.8
(-2.9)
A 		18.9
(-3)
A 		70.3
(3)
A 		63.2
(2.2)
A 		51
C 50.5
(-1.8)
P 		40.1
(-2.5)
A 		33.3
(-3)
A 		121
(3)
P 		88
avr 37.6
(-2.5) 		31.3
(-3) 		51.5
(-1.4) 		105.9
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 50.4
(3)
A 		25.5
(-1)
A 		31.6
(-0)
A 		41.4
(1.6)
A 		17.1
(-2.3)
A 		13
(-3)
A 		37
B 28.1
(1.2)
A 		24.3
(0.5)
A 		20.3
(-0.3)
A 		37.7
(3)
A 		32.7
(2.1)
P 		6
(-3)
A 		32
C 28.9
(-0.5)
A 		57.7
(3)
P 		7.9
(-3)
A 		36.8
(0.5)
A 		34.7
(0.2)
M 		25.4
(-0.9)
A 		50
avr 35.8
(2.3) 		35.8
(2.3) 		19.9
(-1.7) 		38.6
(3) 		28.2
(0.4) 		14.8
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 15.5
(1)
A 		7.6
(-3)
A 		13.3
(-0.2)
A 		19.6
(3)
P 		12
B 6.3
(-2.2)
A 		4.7
(-3)
A 		16.3
(3)
A 		13.5
(1.6)
A 		12
C 16.7
(0.5)
P 		11.5
(-3)
A 		11.6
(-2.9)
A 		20.4
(3)
P 		9
avr 12.8
(-0) 		7.9
(-3) 		13.7
(0.5) 		17.8
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 9.3
(2)
A 		9.1
(1.8)
A 		6.9
(0)
A 		10.5
(3)
A 		5.1
(-1.4)
A 		3.2
(-3)
A 		7
B 9.8
(1.1)
A 		8.1
(0.2)
A 		4.9
(-1.5)
A 		10
(1.2)
A 		13.3
(3)
P 		2.2
(-3)
A 		11
C 10.7
(0.3)
A 		17.6
(3)
P 		2
(-3)
A 		7.4
(-0.9)
A 		11.2
(0.5)
M 		8.5
(-0.5)
A 		16
avr 9.9
(1.5) 		11.6
(3) 		4.6
(-3) 		9.3
(1) 		9.9
(1.5) 		4.6
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183243_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11333
Sequence Type Exemplar sequence
Representative Public ID T07C12.1 NCBI
Target Description T07C12.1 /REP_DB=WormBase Gene ID /WP=CE16369 /TR=Q22283 /GB=CAA98289.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073156(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073156 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-33) (srj-33) mRNA, complete cds. 11/11 None
GENEFINDER00000001543 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9938130:9940117:-1 11/11 None
T07C12.1 ENSEMBL cdna:known chromosome:CEL140:V:9938130:9940117:-1 gene:T07C12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001525 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9938129-9940117(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srj-33
Ensembl T07C12.1
Entrez Gene 188213 Entrez gene
SwissProt Q22283 EMBL-EBI
WormBase CE16369 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98289 Hypothetical protein T07C12.1 [Caenorhabditis elegans] ref|NP_505557.1| Serpentine Receptor, class J family member (srj-33) [Caenorhabditis elegans] 0.0
blast NP_503767 Serpentine Receptor, class J family member (srj-50) [Caenorhabditis elegans] gb|AAG24191.1| Serpentine receptor, class j protein 50 [Caenorhabditis elegans] 3.0E-87
blast CAB70222 Hypothetical protein Y73F8A.3 [Caenorhabditis elegans] ref|NP_502840.2| Serpentine Receptor, class J family member (srj-42) [Caenorhabditis elegans] 7.0E-83
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505557.1 7 13-30,43-65,91-113,126-148,195-217,245-267,282-304
T07C12.1 7 13-30,43-65,91-113,126-148,195-217,245-267,282-304
GENEFINDER00000001543 7 13-30,43-65,91-113,126-148,195-217,245-267,282-304
Sequence
Target Sequence 
>C. ELEGANS:183243_AT
gaaacgcttttatatctgcacattttaaactttatatgctcggaacggtcatgatgttta
tattcttttttgtatattggtacggagttggtattagatttgcatttgctgatgaggaag
ttaaagcttacattggcgaaaactttctccatgattatggagaaaattgcacaacaacca
acttggtctcgttgttgtacaatgaagcctcacataaaattgtatcacgatcatggttca
cactttgtgcggtaaccgtcatttcaacgttatcgataagtttatatatcgtttttggta
ctttaacaatgcgtaagctaaacgaaaattcatttcgaatgagtgcaagcaccaccaagc
tacagaaagctttactaaaatctctaattattcaaacaatcataccaatttgtgtcagtt
atgcaccatgtgtactctgctggtacagtccaattttcaatataaacttgggaagaggat
taaactatctcgaagtaattgctctcgctgcatttccattctgcgatccattggcaatta
tactttgtcttcctgttttaagaaatcgtattcttcatcacatcagaccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACGCTTTTATATCTGCACATTT 69 359 365 Antisense
TAAACTTTATATGCTCGGAACGGTC 62 641 390 Antisense
CAACCAACTTGGTCTCGTTGTTGTA 195 187 539 Antisense
GTATCACGATCATGGTTCACACTTT 107 455 586 Antisense
GTGCGGTAACCGTCATTTCAACGTT 570 473 611 Antisense
TGAGTGCAAGCACCACCAAGCTACA 381 565 704 Antisense
GTTATGCACCATGTGTACTCTGCTG 500 447 782 Antisense
GAAGTAATTGCTCTCGCTGCATTTC 270 337 856 Antisense
TGCATTTCCATTCTGCGATCCATTG 415 579 873 Antisense
GGCAATTATACTTTGTCTTCCTGTT 254 535 897 Antisense
GTATTCTTCATCACATCAGACCAGC 327 453 932 Antisense
Sequence Source Affymetrix Proprietary Database