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[183242_at]

Description C10A4.3 /REP_DB=WormBase Gene ID /WP=CE02471 /TR=Q17891 /GB=AAC46517.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      6grp_highest_nonorm > 91      6grp_total > 69      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 384
1 2 3 4 range
A 310.8
(-0.9)
P 		226.2
(-2.6)
A 		203.3
(-3)
A 		509
(3)
P 		306
B 344.4
(0.3)
P 		135.9
(-3)
M 		208.5
(-1.9)
M 		519.9
(3)
P 		384
C 265.3
(-1.1)
P 		237.8
(-1.8)
A 		182.5
(-3)
A 		449.6
(3)
P 		267
avr 306.8
(-0.8) 		200
(-3) 		198.1
(-3) 		492.8
(3) 		295

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 293.9
(3)
P 		182.8
(-2.6)
P 		175.2
(-3)
P 		252.9
(0.9)
P 		270.5
(1.8)
P 		290.4
(2.8)
P 		119
B 213.6
(-3)
P 		218.4
(-2.6)
P 		251.2
(-0.1)
P 		241.9
(-0.8)
P 		257.2
(0.3)
P 		292
(3)
P 		78
C 198.1
(-2.5)
P 		205.1
(-2.2)
P 		200.4
(-2.4)
P 		211.5
(-1.9)
P 		189
(-3)
P 		308.7
(3)
P 		120
avr 235.2
(-0.9) 		202.1
(-3) 		208.9
(-2.6) 		235.4
(-0.9) 		238.9
(-0.7) 		297
(3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 113.2
(3)
P 		49.1
(-3)
A 		53.2
(-2.6)
A 		74.5
(-0.6)
P 		64
B 109.8
(2.9)
P 		33.6
(-3)
M 		48.3
(-1.9)
M 		110.8
(3)
P 		77
C 87.8
(3)
P 		68.4
(-1.8)
A 		63.6
(-3)
A 		75.8
(0)
P 		24
avr 103.6
(3) 		50.4
(-3) 		55
(-2.5) 		87
(1.1) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 54.2
(-0.8)
P 		65
(0.7)
P 		38.1
(-3)
P 		64.1
(0.6)
P 		81.6
(3)
P 		70.7
(1.5)
P 		44
B 74.3
(-1.3)
P 		72.7
(-1.5)
P 		61
(-3)
P 		64.1
(-2.6)
P 		104.5
(2.4)
P 		108.9
(3)
P 		48
C 73.4
(0)
P 		62.6
(-1)
P 		51
(-2.2)
P 		42.5
(-3)
P 		61.2
(-1.2)
P 		103.3
(3)
P 		61
avr 67.3
(-0.7) 		66.8
(-0.7) 		50
(-3) 		56.9
(-2.1) 		82.4
(1.4) 		94.3
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183242_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16423
Sequence Type Exemplar sequence
Representative Public ID C10A4.3 NCBI
Target Description C10A4.3 /REP_DB=WormBase Gene ID /WP=CE02471 /TR=Q17891 /GB=AAC46517.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076851(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076851 NCBI Caenorhabditis elegans C10A4.3 (C10A4.3) mRNA, complete cds. 11/11 None
GENEFINDER00000027718 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7407401:7408648:1 11/11 None
C10A4.3 ENSEMBL cdna:known chromosome:CEL140:X:7407401:7408648:1 gene:C10A4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027707 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7407399-7408647(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10A4.3
Entrez Gene 182484 Entrez gene
SwissProt Q17891 EMBL-EBI
WormBase CE02471 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46517 Hypothetical protein C10A4.3 [Caenorhabditis elegans] ref|NP_509252.1| C10A4.3 [Caenorhabditis elegans] 1.0E-124
blast CAE65884 Hypothetical protein CBG11043 [Caenorhabditis briggsae] 1.0E-106
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509252.1 4 7-29,63-85,92-114,158-180
C10A4.3 4 7-29,63-85,92-114,158-180
GENEFINDER00000027718 4 7-29,63-85,92-114,158-180
Sequence
Target Sequence 
>C. ELEGANS:183242_AT
gcctctcgtttatttctatttgtctctacatcacagccgcaatgaccgaaagttccatca
accatcgtatcatcccacgtacacagtgtttgacgtgtaatcctcatcaagagtttccat
atcagattttgaatcacctctcccaaatttcatttttcaccaaaatcaattttgccgtgg
atttgtgcatttttgtcatcaccactttcaatttagtcaaagataatcaaagtggagctg
gcgacttcctcatttccattggcgttttctgcaaaatctatcttatcccgtacatgctct
acaacttcttttctggagcccacagtcctgcacacaatatctcctatctcctgaacaacg
aggtgtgtggaactcttggaaactgcctgaatggaaacgtcgctcgtatcatgtacagct
gcatttcggtcactattattatgatgcttgcgtttccggctctcatcgcttcttggggtg
tcatgtacatcatcttcgttcggtattttgatcaaccgttgccaatggtcactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTCTCGTTTATTTCTATTTGTCT 118 283 53 Antisense
TCTACATCACAGCCGCAATGACCGA 303 613 77 Antisense
GTATCATCCCACGTACACAGTGTTT 541 453 119 Antisense
TGAATCACCTCTCCCAAATTTCATT 671 575 182 Antisense
GTGCATTTTTGTCATCACCACTTTC 158 481 237 Antisense
GCAAAATCTATCTTATCCCGTACAT 396 319 323 Antisense
TACATGCTCTACAACTTCTTTTCTG 132 645 343 Antisense
AACGTCGCTCGTATCATGTACAGCT 68 145 448 Antisense
TACAGCTGCATTTCGGTCACTATTA 479 643 466 Antisense
GGTGTCATGTACATCATCTTCGTTC 351 499 529 Antisense
GATCAACCGTTGCCAATGGTCACTG 344 421 562 Antisense
Sequence Source Affymetrix Proprietary Database