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[183241_at]

Description Y41C4A.1 /REP_DB=WormBase Gene ID /WP=CE20241 /TR=Q9U2I9 /GB=CAB63352.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 02      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 1.9
(-3)
A 		2.8
(-2.9)
A 		2.6
(-2.9)
A 		50.8
(3)
A 		49
B 2
(-2.8)
A 		5
(3)
A 		1.9
(-3)
A 		2.2
(-2.4)
A 		3
C 6.5
(3)
A 		2.4
(-3)
A 		2.8
(-2.4)
A 		6
(2.3)
A 		4
avr 3.5
(-2.6) 		3.4
(-2.7) 		2.4
(-3) 		19.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 4.4
(-3)
A 		5.2
(-2.6)
A 		18
(3)
A 		5.3
(-2.6)
A 		4.7
(-2.9)
A 		12.1
(0.4)
A 		14
B 6.6
(-2.1)
A 		3.4
(-2.7)
A 		33.2
(3)
A 		8.6
(-1.7)
A 		5.2
(-2.3)
A 		1.7
(-3)
A 		32
C 4.7
(-0.5)
A 		8.4
(2.6)
A 		8.9
(3)
A 		4.5
(-0.7)
A 		2
(-2.8)
A 		1.8
(-3)
A 		7
avr 5.2
(-2.6) 		5.7
(-2.4) 		20
(3) 		6.1
(-2.2) 		4
(-3) 		5.2
(-2.6) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.7
(-2.9)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		7.4
(3)
A 		7
B 0.6
(-1.5)
A 		1.2
(3)
A 		0.4
(-3)
A 		0.5
(-2.3)
A 		1
C 2.1
(3)
A 		0.7
(-3)
A 		1
(-1.7)
A 		1
(-1.7)
A 		1
avr 1.1
(-2) 		0.8
(-2.7) 		0.7
(-3) 		3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.8
(-1.1)
A 		3.9
(3)
A 		1.3
(-2)
A 		1.4
(-1.8)
A 		2.9
(1.1)
A 		3
B 2.3
(-1.6)
A 		1.1
(-2.6)
A 		8.1
(3)
A 		2.3
(-1.6)
A 		2.1
(-1.8)
A 		0.6
(-3)
A 		8
C 1.7
(0.3)
A 		2.6
(3)
A 		2.3
(2.1)
A 		0.9
(-2.1)
A 		0.6
(-3)
A 		0.6
(-3)
A 		2
avr 1.6
(-2.6) 		1.8
(-2.3) 		4.8
(3) 		1.5
(-2.8) 		1.4
(-3) 		1.4
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183241_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7036
Sequence Type Exemplar sequence
Representative Public ID Y41C4A.1 NCBI
Target Description Y41C4A.1 /REP_DB=WormBase Gene ID /WP=CE20241 /TR=Q9U2I9 /GB=CAB63352.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067106(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067106 NCBI Caenorhabditis elegans Y41C4A.1 (Y41C4A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000034901 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11647295:11649769:1 11/11 None
SNAP00000034875 ENSEMBL cdna:SNAP chromosome:CEL140:III:11648624:11649769:1 11/11 None
Y41C4A.1 ENSEMBL cdna:known chromosome:CEL140:III:11647645:11649769:1 gene:Y41C4A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11647640-11649765(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41C4A.1
Entrez Gene 189813 Entrez gene
SwissProt Q9U2I9 EMBL-EBI
WormBase CE31833 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63352 Hypothetical protein Y41C4A.1 [Caenorhabditis elegans] ref|NP_499507.2| Y41C4A.1 [Caenorhabditis elegans] 0.0
blast CAB63352 Hypothetical protein Y41C4A.1 [Caenorhabditis elegans] ref|NP_499507.2| Y41C4A.1 [Caenorhabditis elegans] 1.0E-175
blast NP_001023366 T08B6.9 [Caenorhabditis elegans] gb|AAO91700.1| Hypothetical protein T08B6.9 [Caenorhabditis elegans] 9.0E-51
blast NP_001023366 T08B6.9 [Caenorhabditis elegans] gb|AAO91700.1| Hypothetical protein T08B6.9 [Caenorhabditis elegans] 2.0E-49
blast NP_001023366 T08B6.9 [Caenorhabditis elegans] gb|AAO91700.1| Hypothetical protein T08B6.9 [Caenorhabditis elegans] 9.0E-40
blast CAB63386 Hypothetical protein Y51H4A.23 [Caenorhabditis elegans] ref|NP_502980.1| Y51H4A.23 [Caenorhabditis elegans] 3.0E-26
Sequence
Target Sequence 
>C. ELEGANS:183241_AT
gtggatccggcgaagctgattggtagagtcacgatgaagctgcaaattggcagagaagac
aatgtacgagtggaatatgaagattttttcgaaattcgcaagttttataacgctcacgga
gatcagaaatggtacataactactgttgaggtgttgtacccacctaatctcgtcacaaat
cttaaggatcttcaccttagagtgattgccgacgtggcgatgagtcggttcgaagctcgg
ctcactgatcaggagcactggtactcagccgtaggatttctacaagaactcacacagtac
aggaatcaaactctggagtatgagagttgtgcggaactcgagaaaaccctctgggcgaag
ggaatgcagtacaaggcagtgatgagcgggtattggaaatacgaaccccttccagcgccg
gcaaccgacgttacttatttcaaactacgcatgaagatgaccggagttgtcgataggccc
acgccatactttttggcttcagattggacgtttcatttggaatggcacccgatggaccag
ttctactacctgaagaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGATCCGGCGAAGCTGATTGGTA 12 491 733 Antisense
CCCACCTAATCTCGTCACAAATCTT 118 259 891 Antisense
ACCTTAGAGTGATTGCCGACGTGGC 677 85 926 Antisense
GTGGCGATGAGTCGGTTCGAAGCTC 303 491 946 Antisense
GAAGCTCGGCTCACTGATCAGGAGC 245 343 964 Antisense
ATCAGGAGCACTGGTACTCAGCCGT 642 27 980 Antisense
GAACTCGAGAAAACCCTCTGGGCGA 595 349 1066 Antisense
CCCACGCCATACTTTTTGGCTTCAG 464 235 1210 Antisense
TTGGCTTCAGATTGGACGTTTCATT 691 705 1225 Antisense
TGGAATGGCACCCGATGGACCAGTT 433 547 1250 Antisense
GGACCAGTTCTACTACCTGAAGAGA 690 521 1266 Antisense
Sequence Source Affymetrix Proprietary Database