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[183240_s_at]

Description H37A05.1 /REP_DB=WormBase Gene ID /WP=CE19946 /TR=Q9XXT5 /GB=CAA16154.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 77      6grp_total > 45      4grp_total > 14      6grp_highest_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3210
1 2 3 4 range
A 3245.3
(0.8)
P 		1398.4
(-2.8)
P 		1317.9
(-3)
P 		4390.5
(3)
P 		3073
B 3399
(1.1)
P 		1379.4
(-2.8)
P 		1295.2
(-3)
P 		4349.8
(3)
P 		3055
C 3072.4
(1.2)
P 		1352.9
(-2.6)
P 		1180.3
(-3)
P 		3908
(3)
P 		2728
avr 3238.9
(1) 		1376.9
(-2.8) 		1264.5
(-3) 		4216.1
(3) 		2952

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 839
1 2 3 4 5 6 range
A 1466.9
(0)
P 		1540
(1.1)
P 		1263.6
(-3)
P 		1397.7
(-1)
P 		1317.6
(-2.2)
P 		1667.9
(3)
P 		404
B 1370
(-0.1)
P 		1370.6
(-0.1)
P 		1576.1
(3)
P 		1406.2
(0.4)
P 		1183.1
(-3)
P 		1374.2
(-0.1)
P 		393
C 1894.9
(3)
P 		1532.5
(0.4)
P 		1729.4
(1.8)
P 		1056.1
(-3)
P 		1292.9
(-1.3)
P 		1512.3
(0.3)
P 		839
avr 1577.3
(3) 		1481
(1.2) 		1523
(2) 		1286.7
(-2.6) 		1264.5
(-3) 		1518.1
(1.9) 		313
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 882
1 2 3 4 range
A 1181.6
(3)
P 		303.5
(-3)
P 		344.5
(-2.7)
P 		642.7
(-0.7)
P 		878
B 1083.9
(3)
P 		340.7
(-2.7)
P 		300.1
(-3)
P 		927
(1.8)
P 		784
C 1017.1
(3)
P 		389
(-3)
P 		411.4
(-2.8)
P 		658.9
(-0.4)
P 		628
avr 1094.2
(3) 		344.4
(-3) 		352
(-2.9) 		742.9
(0.2) 		750

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 490
1 2 3 4 5 6 range
A 270.4
(-3)
P 		547.7
(3)
P 		275.2
(-2.9)
P 		354.5
(-1.2)
P 		397.6
(-0.2)
P 		406.1
(-0.1)
P 		277
B 476.7
(1.5)
P 		456.2
(0.6)
P 		382.7
(-2.6)
P 		372.4
(-3)
P 		480.7
(1.6)
P 		512.4
(3)
P 		140
C 702.4
(3)
P 		467.6
(0.1)
P 		440.2
(-0.2)
P 		212.4
(-3)
P 		418.4
(-0.5)
P 		506.3
(0.6)
P 		490
avr 483.2
(2.8) 		490.5
(3) 		366
(-1.2) 		313.1
(-3) 		432.2
(1) 		474.9
(2.5) 		177
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183240_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12917
Sequence Type Exemplar sequence
Representative Public ID H37A05.1 NCBI
Target Description H37A05.1 /REP_DB=WormBase Gene ID /WP=CE19946 /TR=Q9XXT5 /GB=CAA16154.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073979(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073979 NCBI Caenorhabditis elegans H37A05.1 (H37A05.1) mRNA, complete cds. 11/11 None
SNAP00000004887 ENSEMBL cdna:SNAP chromosome:CEL140:V:13653404:13656593:-1 10/11 None
GENEFINDER00000004890 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13653201:13656593:-1 11/11 None
H37A05.1 ENSEMBL cdna:known chromosome:CEL140:V:13652897:13656721:-1 gene:H37A05.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13653200-13656593(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H37A05.1
Entrez Gene 179853 Entrez gene
SwissProt Q9XXT5 EMBL-EBI
WormBase CE19946 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249168_AT lipin family protein at
CANINE_2:CFAAFFX.28215.1.S1_S_AT similar to Lipin-2 cfa
CHICKEN:GGAAFFX.12825.1.S1_S_AT lipin 2 gga
CHICKEN:GGAAFFX.9429.1.S1_S_AT lipin 2 gga
CHICKEN:GGAAFFX.9429.4.S1_AT lipin 2 gga
HG-U133A:202459_S_AT lipin 2 hs
HG-U133A_2:202459_S_AT lipin 2 hs
HG-U133_PLUS_2:202459_S_AT lipin 2 hs
HG-U133A:202460_S_AT lipin 2 hs
HG-U133_PLUS_2:202460_S_AT lipin 2 hs
HG-U133A_2:202460_S_AT lipin 2 hs
HU35KSUBB:RC_T95515_S_AT lipin 2 hs
HU35KSUBC:RC_R01450_AT lipin 2 hs
HUGENEFL:D87436_AT lipin 2 hs
U133_X3P:G7662021_3P_A_AT lipin 2 hs
U133_X3P:HS.166318.0.A1_3P_A_AT lipin 2 hs
HG-U95AV2:40447_AT lipin 2 hs
HG-U95B:48132_AT lipin 2 hs
HG-U133_PLUS_2:244799_S_AT Lipin 2 hs
HG-U133B:244799_S_AT Lipin 2 hs
HG-U95C:56874_AT Lipin 2 hs
HG-U95C:58228_AT Lipin 2 hs
HG-U95E:73373_AT Lipin 2 hs
HU35KSUBB:RC_T70318_AT Lipin 2 hs
U133_X3P:HS.246780.0.A1_3P_AT Lipin 2 hs
MU11KSUBA:AA270915_S_AT lipin 2 mm
MG-U74AV2:96806_AT lipin 2 mm
MG-U74BV2:110009_AT lipin 2 mm
MG-U74AV2:161165_F_AT lipin 2 mm
MOE430A:1452836_AT lipin 2 mm
MOUSE430A_2:1452836_AT lipin 2 mm
MOUSE430_2:1452836_AT lipin 2 mm
MOE430A:1460290_AT lipin 2 mm
MOUSE430A_2:1460290_AT lipin 2 mm
MOUSE430_2:1460290_AT lipin 2 mm
MOE430A:1452837_AT lipin 2 mm
MOUSE430A_2:1452837_AT lipin 2 mm
MOUSE430_2:1452837_AT lipin 2 mm
MOE430B:1446316_AT Lipin 2, mRNA (cDNA clone MGC:46819 IMAGE:5101211) mm
MOUSE430_2:1446316_AT Lipin 2, mRNA (cDNA clone MGC:46819 IMAGE:5101211) mm
MU19KSUBB:TC34003_S_AT Lipin 2, mRNA (cDNA clone MGC:46819 IMAGE:5101211) mm
RAE230B:1396398_AT lipin 2 (predicted) rn
RAT230_2:1396398_AT lipin 2 (predicted) rn
RAE230B:1391378_AT Lipin 2 (predicted) rn
RAT230_2:1391378_AT Lipin 2 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA16154 Hypothetical protein H37A05.1 [Caenorhabditis elegans] ref|NP_506380.1| H37A05.1 [Caenorhabditis elegans] 0.0
blast CAE66268 Hypothetical protein CBG11512 [Caenorhabditis briggsae] 0.0
blast CAE66269 Hypothetical protein CBG11513 [Caenorhabditis briggsae] 1.0E-116
blast CAE66269 Hypothetical protein CBG11513 [Caenorhabditis briggsae] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR007651 EMBL-EBI Lipin, N-terminal conserved region 8.9E-72
Sequence
Target Sequence 
>C. ELEGANS:183240_S_AT
cgaagcagttgcctgatggacccgtgttgctgtcacctacaagcattataacggctttca
gaagagaagtcatcgaacgtcgtcctgaagagttcaaaatcgctgctctcacggatttga
agcagttattccccagtggcaatccgttctacgctggcttcggaaatcgtatcactgacg
tggtttcttacgaagctgtcgccgttccagctgctagaattctgataattgatccaagcg
gcaaagtgaagagatcagattcatcaggattagcgttgagctacaagtcaatggccagtg
atacggtggactatatgttccctccactctccgttcatgtgaaaggtgatgcacgaaaaa
ctgaacgtctcacgtctacatggagcaagcccttggagcacagcaacttcacacattggc
acatgacaccaaaggatgtacacgatgatgagctcctagaatatgaagctcagagaaaaa
aattgattgcagaacagaaagcaaagaattctttttatttttttgctttccattggaatt
accaaagtctcattgctcaacctagtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAAGCAGTTGCCTGATGGACCCGT 424 253 1886 Antisense
CCGTGTTGCTGTCACCTACAAGCAT 550 265 1907 Antisense
GAGAAGTCATCGAACGTCGTCCTGA 52 391 1949 Antisense
ATCGCTGCTCTCACGGATTTGAAGC 557 37 1984 Antisense
CCAGTGGCAATCCGTTCTACGCTGG 13 273 2018 Antisense
CGCCGTTCCAGCTGCTAGAATTCTG 88 257 2085 Antisense
TACGGTGGACTATATGTTCCCTCCA 514 647 2187 Antisense
GAACGTCTCACGTCTACATGGAGCA 24 349 2248 Antisense
TGGAGCAAGCCCTTGGAGCACAGCA 197 549 2266 Antisense
GCACAGCAACTTCACACATTGGCAC 425 317 2283 Antisense
AAGTCTCATTGCTCAACCTAGTCAA 572 153 2430 Antisense
Sequence Source Affymetrix Proprietary Database