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[183239_at]

Description ZC513.2 /REP_DB=WormBase Gene ID /WP=CE07609 /TR=Q23365 /GB=AAC48264.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 40
(-3)
A 		97.9
(1)
P 		127
(3)
A 		43
(-2.8)
A 		87
B 26.4
(-3)
A 		100.9
(1.5)
A 		125.9
(3)
A 		37.4
(-2.3)
A 		100
C 19.3
(-3)
A 		109.9
(3)
A 		109.8
(3)
P 		36.1
(-1.9)
A 		91
avr 28.6
(-3) 		102.9
(1.8) 		120.9
(3) 		38.8
(-2.3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 8.8
(-3)
A 		111.8
(2.3)
P 		52.1
(-0.8)
A 		126.3
(3)
A 		95.5
(1.4)
A 		40.8
(-1.4)
A 		118
B 25.7
(-3)
A 		55.3
(0.3)
M 		26.8
(-2.9)
A 		51.3
(-0.1)
A 		78.9
(3)
M 		25.6
(-3)
A 		53
C 20.8
(-3)
A 		72.5
(3)
A 		41.5
(-0.6)
A 		65.9
(2.2)
A 		50.4
(0.4)
A 		27.7
(-2.2)
A 		52
avr 18.4
(-3) 		79.9
(2.9) 		40.1
(-0.9) 		81.2
(3) 		74.9
(2.4) 		31.4
(-1.8) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 14.6
(-1.1)
A 		21.3
(0.3)
P 		33.2
(3)
A 		6.3
(-3)
A 		27
B 8.4
(-2.9)
A 		24.9
(1.8)
A 		29.2
(3)
A 		8
(-3)
A 		21
C 6.4
(-2.9)
A 		31.6
(1.8)
A 		38.3
(3)
P 		6.1
(-3)
A 		32
avr 9.8
(-2.3) 		25.9
(1.3) 		33.6
(3) 		6.8
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 1.6
(-3)
A 		39.8
(3)
P 		11.3
(-1.5)
A 		32
(1.8)
A 		28.8
(1.3)
A 		9.9
(-1.7)
A 		38
B 8.9
(-2.4)
A 		18.4
(-0.2)
M 		6.5
(-3)
A 		13.6
(-1.3)
A 		32
(3)
M 		9.5
(-2.3)
A 		26
C 7.7
(-3)
A 		22.1
(3)
A 		10.6
(-1.8)
A 		13.2
(-0.7)
A 		16.3
(0.6)
A 		9.3
(-2.3)
A 		14
avr 6.1
(-3) 		26.8
(3) 		9.5
(-2) 		19.6
(0.9) 		25.7
(2.7) 		9.6
(-2) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183239_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11321
Sequence Type Exemplar sequence
Representative Public ID ZC513.2 NCBI
Target Description ZC513.2 /REP_DB=WormBase Gene ID /WP=CE07609 /TR=Q23365 /GB=AAC48264.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072674(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072674 NCBI Caenorhabditis elegans ZC513.2 (ZC513.2) mRNA, complete cds. 11/11 None
SNAP00000025314 ENSEMBL cdna:SNAP chromosome:CEL140:V:8057116:8058615:1 10/11 None
GENEFINDER00000025321 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8057212:8060144:1 11/11 None
ZC513.2 ENSEMBL cdna:known chromosome:CEL140:V:8057792:8058615:1 gene:ZC513.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8057792-8058616(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC513.2
Entrez Gene 191194 Entrez gene
SwissProt Q23365 EMBL-EBI
WormBase CE07609 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48263 Hypothetical protein ZC513.1 [Caenorhabditis elegans] ref|NP_505076.1| ZC513.1 [Caenorhabditis elegans] 1.0E-162
blast CAE66148 Hypothetical protein CBG11378 [Caenorhabditis briggsae] 1.0E-142
blast AAC48264 Hypothetical protein ZC513.2 [Caenorhabditis elegans] ref|NP_505075.1| ZC513.2 [Caenorhabditis elegans] 1.0E-95
blast AAC48264 Hypothetical protein ZC513.2 [Caenorhabditis elegans] ref|NP_505075.1| ZC513.2 [Caenorhabditis elegans] 8.0E-95
blast AAC48264 Hypothetical protein ZC513.2 [Caenorhabditis elegans] ref|NP_505075.1| ZC513.2 [Caenorhabditis elegans] 3.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 1.1E-5
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 1.3E-4
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 6.2E-12
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 6.4E-6
Sequence
Target Sequence 
>C. ELEGANS:183239_AT
tgccattctctcagatcgggatcaatggaatcgtgaatctgaagaaaatgcacgtcaaaa
actaccgcgctcctcaggtgtcggttctcaactttttgccaccgcggcatatagtcttgg
gattggaaaatctggatattggattgggttccgaatttactgcaaatgcagttccaattg
tagttgaaggaagtttagttggacaaataaccggaatgacggtagctcttacaactgaac
ttttaacagatgttactgggaaaatgaatgcagtagtaagaaactgctcagctttaattg
gaaacagccacatagttttgaacccgacaggtccaatgagtatatttgtgaaaacttttg
agccaatgattaatgattctgttcgtcaacgtattcctgaaatgttttgtagtcgtcttc
agaatttaattgagaaaaatatttcaaaactatttgaatttatcacgaagattgatctgg
aggactacttcccaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCATTCTCTCAGATCGGGATCAA 405 585 14 Antisense
AATGCACGTCAAAAACTACCGCGCT 170 165 60 Antisense
AACTTTTTGCCACCGCGGCATATAG 511 137 103 Antisense
ACCGCGGCATATAGTCTTGGGATTG 412 89 114 Antisense
GGATTGGGTTCCGAATTTACTGCAA 176 507 154 Antisense
GACGGTAGCTCTTACAACTGAACTT 421 375 231 Antisense
ACAGCCACATAGTTTTGAACCCGAC 346 109 317 Antisense
GAACCCGACAGGTCCAATGAGTATA 8 345 333 Antisense
TGTTCGTCAACGTATTCCTGAAATG 225 561 393 Antisense
AATGTTTTGTAGTCGTCTTCAGAAT 459 163 414 Antisense
TGATCTGGAGGACTACTTCCCAAAA 197 565 486 Antisense
Sequence Source Affymetrix Proprietary Database