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[183238_s_at]

Description W01C8.4 /REP_DB=WormBase Gene ID /WP=CE26019 /TR=Q9GYG7 /GB=AAG00028.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 61      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 120.9
(3)
P 		38.9
(-2.5)
A 		67.8
(-0.6)
A 		32.2
(-3)
A 		89
B 107.6
(2.8)
P 		111.7
(3)
A 		111.4
(3)
A 		12
(-3)
A 		100
C 120.9
(3)
A 		102.5
(1.9)
A 		67.1
(-0.3)
A 		24.3
(-3)
A 		97
avr 116.5
(3) 		84.4
(0.9) 		82.1
(0.8) 		22.8
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 150.5
(1.3)
P 		121.8
(-0.1)
P 		185.5
(3)
P 		122.5
(-0)
P 		97.9
(-1.2)
P 		60.4
(-3)
A 		125
B 145.8
(3)
P 		140.4
(2.7)
P 		111.7
(0.9)
P 		127.5
(1.9)
P 		98.5
(0.1)
A 		48.1
(-3)
A 		98
C 92
(-0.4)
P 		181.3
(3)
P 		121.7
(0.7)
P 		156.3
(2.1)
P 		22.7
(-3)
A 		59.4
(-1.6)
A 		159
avr 129.4
(1.8) 		147.8
(3) 		139.6
(2.5) 		135.4
(2.2) 		73
(-1.9) 		56
(-3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 44
(3)
P 		8.4
(-2.4)
A 		17.7
(-1)
A 		4.7
(-3)
A 		39
B 34.3
(3)
P 		27.6
(1.7)
A 		25.8
(1.4)
A 		2.6
(-3)
A 		32
C 40
(3)
A 		29.5
(1.2)
A 		23.4
(0.2)
A 		4.1
(-3)
A 		36
avr 39.4
(3) 		21.8
(0) 		22.3
(0.1) 		3.8
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 27.8
(-0.3)
P 		43.3
(3)
P 		40.4
(2.4)
P 		31.1
(0.4)
P 		29.5
(0.1)
P 		14.7
(-3)
A 		29
B 50.7
(3)
P 		46.7
(2.3)
P 		27.1
(-1.3)
P 		33.8
(-0.1)
P 		40
(1)
A 		17.9
(-3)
A 		33
C 34.1
(0.4)
P 		55.3
(3)
P 		31
(-0)
P 		31.4
(0)
P 		7.3
(-3)
A 		19.9
(-1.4)
A 		48
avr 37.5
(0.9) 		48.4
(3) 		32.8
(-0) 		32.1
(-0.2) 		25.6
(-1.4) 		17.5
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183238_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16412
Sequence Type Exemplar sequence
Representative Public ID W01C8.4 NCBI
Target Description W01C8.4 /REP_DB=WormBase Gene ID /WP=CE26019 /TR=Q9GYG7 /GB=AAG00028.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029763(11), NM_001029762(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029763 NCBI Caenorhabditis elegans W01C8.4b (W01C8.4) mRNA, complete cds. 11/11 None
NM_001029762 NCBI Caenorhabditis elegans W01C8.4a (W01C8.4) mRNA, complete cds. 11/11 None
SNAP00000032376 ENSEMBL cdna:SNAP chromosome:CEL140:X:5680519:5684572:-1 11/11 None
GENEFINDER00000032382 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5680519:5684572:-1 11/11 None
W01C8.4b ENSEMBL cdna:known chromosome:CEL140:X:5680307:5684699:-1 gene:W01C8.4 11/11 None
W01C8.4a ENSEMBL cdna:known chromosome:CEL140:X:5680519:5683544:-1 gene:W01C8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5680518-5684699(-) 100.0 100.0
Public Domain and Genome References
Ensembl W01C8.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024934 W01C8.4b [Caenorhabditis elegans] gb|AAN39665.2| Hypothetical protein W01C8.4b [Caenorhabditis elegans] 0.0
blast NP_001024933 W01C8.4a [Caenorhabditis elegans] gb|AAN39664.1| Hypothetical protein W01C8.4a [Caenorhabditis elegans] 0.0
blast NP_001024933 W01C8.4a [Caenorhabditis elegans] gb|AAN39664.1| Hypothetical protein W01C8.4a [Caenorhabditis elegans] 1.0E-176
blast NP_001024934 W01C8.4b [Caenorhabditis elegans] gb|AAN39665.2| Hypothetical protein W01C8.4b [Caenorhabditis elegans] 1.0E-176
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 5.1E-11
Pfam IPR001214 EMBL-EBI Nuclear protein SET 9.3E-13
Pfam IPR001214 EMBL-EBI Nuclear protein SET 5.1E-11
Pfam IPR001214 EMBL-EBI Nuclear protein SET 5.1E-11
Sequence
Target Sequence 
>C. ELEGANS:183238_S_AT
gtatgtggtttcttcgtcaatatccgatgaagatacatatgctcttgacgttgtctacga
tacggacaaatatcaacttgcagcaataattgacacgaacaaaaagcagaagtctgtcaa
gaaatatccgccatttgtgaacaagaaatacacatcgtcaatcctcgagctacacgaaac
gcctctcagtctgaatccacggtatgtggggaacgtcgggcgatttgtctcctcgtcttg
catgggaaatgtcaagctcaactttgtccacaccgcgggattcaatccagggaatattcg
tgtgatcttcacttccacgatgcccattttcccgagtcaggaagtgacattcagatacag
cgatgagtatatcatcaagcagttgggtgattgctgcaagtgtgccagcttatgttgcat
caccaatagagctttgtacccattcgtcacattggacgatctccaaagaatgaaccgcaa
gatacaggatatgcactttgatgaattcataaagaacacagcagcaccacaacttcatag
at

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGTGGTTTCTTCGTCAATATCC 362 455 981 Antisense
TACATATGCTCTTGACGTTGTCTAC 190 645 1014 Antisense
CTCTCAGTCTGAATCCACGGTATGT 382 229 1163 Antisense
TGGGGAACGTCGGGCGATTTGTCTC 120 553 1187 Antisense
TTGTCTCCTCGTCTTGCATGGGAAA 29 703 1205 Antisense
CCACACCGCGGGATTCAATCCAGGG 492 271 1248 Antisense
CGTGTGATCTTCACTTCCACGATGC 503 245 1279 Antisense
TGCCCATTTTCCCGAGTCAGGAAGT 152 585 1301 Antisense
GTGTGCCAGCTTATGTTGCATCACC 597 487 1380 Antisense
CAATAGAGCTTTGTACCCATTCGTC 129 169 1404 Antisense
ACAGCAGCACCACAACTTCATAGAT 595 107 1498 Antisense
Sequence Source Affymetrix Proprietary Database