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[183237_s_at]

Description ZK180.5 /REP_DB=WormBase Gene ID /WP=CE28179 /TR=Q23446 /GB=AAB52969.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 43      6grp_total > 10      4grp_total > 57      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14987
1 2 3 4 range
A 161.6
(-3)
A 		11986.2
(2)
P 		14451.1
(3)
P 		207.1
(-3)
A 		14290
B 182.4
(-3)
A 		11771.5
(1.7)
P 		15120.2
(3)
P 		133.5
(-3)
A 		14987
C 146.8
(-3)
A 		12467.6
(2.8)
P 		12862
(3)
P 		199.3
(-3)
M 		12715
avr 163.6
(-3) 		12075.1
(2.1) 		14144.4
(3) 		180
(-3) 		13981

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8743
1 2 3 4 5 6 range
A 226.4
(-3)
A 		8969.3
(3)
P 		3654.3
(-0.6)
P 		3514.1
(-0.7)
P 		2863.9
(-1.2)
P 		3534.2
(-0.7)
P 		8743
B 234.8
(-3)
M 		8039
(3)
P 		5359.9
(0.9)
P 		2874.1
(-1)
P 		2295.5
(-1.4)
P 		2248.1
(-1.5)
P 		7804
C 315.8
(-3)
P 		7331.7
(3)
P 		5564
(1.5)
P 		2253.3
(-1.3)
P 		4341.4
(0.4)
P 		1779.9
(-1.7)
P 		7016
avr 259
(-3) 		8113.3
(3) 		4859.4
(0.5) 		2880.5
(-1) 		3166.9
(-0.8) 		2520.7
(-1.3) 		7854
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4454
1 2 3 4 range
A 58.8
(-3)
A 		2601.9
(1.1)
P 		3777.8
(3)
P 		30.3
(-3)
A 		3748
B 58.2
(-2.9)
A 		2907.3
(2)
P 		3503.7
(3)
P 		28.4
(-3)
A 		3475
C 48.6
(-3)
A 		3584.5
(1.8)
P 		4482.8
(3)
P 		33.6
(-3)
M 		4449
avr 55.2
(-3) 		3031.2
(1.6) 		3921.4
(3) 		30.8
(-3) 		3891

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3148
1 2 3 4 5 6 range
A 41.7
(-3)
A 		3189.9
(3)
P 		795.8
(-1.6)
P 		891.3
(-1.4)
P 		864.2
(-1.4)
P 		860.5
(-1.4)
P 		3148
B 81.7
(-3)
M 		2675.8
(3)
P 		1301.6
(-0.2)
P 		761.2
(-1.4)
P 		932.7
(-1)
P 		838.3
(-1.3)
P 		2594
C 117
(-3)
P 		2237.1
(3)
P 		1416.1
(0.7)
P 		453.1
(-2)
P 		1404.8
(0.6)
P 		595.8
(-1.6)
P 		2120
avr 80.1
(-3) 		2700.9
(3) 		1171.2
(-0.5) 		701.9
(-1.6) 		1067.2
(-0.7) 		764.9
(-1.4) 		2621
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183237_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10982
Sequence Type Exemplar sequence
Representative Public ID ZK180.5 NCBI
Target Description ZK180.5 /REP_DB=WormBase Gene ID /WP=CE28179 /TR=Q23446 /GB=AAB52969.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171905(9), NM_171321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171905 NCBI Caenorhabditis elegans ZK180.5b (ZK180.5) mRNA, complete cds. 9/11 None
NM_171321 NCBI Caenorhabditis elegans ZK180.5a (ZK180.5) mRNA, complete cds. 11/11 None
SNAP00000005946 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4515292:4517117:-1 11/11 None
GENEFINDER00000005958 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4515292:4523804:-1 11/11 None
ZK180.5b.2 ENSEMBL cdna:known chromosome:CEL140:IV:4514872:4517117:-1 gene:ZK180.5 9/11 A 
ZK180.5a ENSEMBL cdna:known chromosome:CEL140:IV:4515049:4517117:-1 gene:ZK180.5 11/11 A 
ZK180.5b.1 ENSEMBL cdna:known chromosome:CEL140:IV:4515049:4517117:-1 gene:ZK180.5 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171906 1/11 Cross Hyb Matching Probes None
ZK180.5c 1/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177218 3 2 NM_171321 183237_s_at (11)
NM_171905 183237_s_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4515297-4517123(-) 98.4 100.0
Public Domain and Genome References
Ensembl ZK180.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52970 Hypothetical protein ZK180.6 [Caenorhabditis elegans] ref|NP_500584.1| ZK180.6 [Caenorhabditis elegans] 0.0
blast CAE58544 Hypothetical protein CBG01703 [Caenorhabditis briggsae] 1.0E-139
blast AAB52969 Hypothetical protein ZK180.5a [Caenorhabditis elegans] ref|NP_741377.2| ZK180.5a [Caenorhabditis elegans] 1.0E-43
blast AAM97986 Hypothetical protein ZK180.5b [Caenorhabditis elegans] ref|NP_741378.1| ZK180.5b [Caenorhabditis elegans] 3.0E-43
blast AAB52969 Hypothetical protein ZK180.5a [Caenorhabditis elegans] ref|NP_741377.2| ZK180.5a [Caenorhabditis elegans] 3.0E-43
blast AAB52969 Hypothetical protein ZK180.5a [Caenorhabditis elegans] ref|NP_741377.2| ZK180.5a [Caenorhabditis elegans] 8.0E-37
Sequence
Target Sequence 
>C. ELEGANS:183237_S_AT
ccattcgtcgagccagttactgaggtgaatactgaagaatatgaagaggaagttgttgag
ccagctgagccacaagttgttgagccacaagttgtcgagccagttccacagccacacgtt
gaaccagttcaaccagttcaaccagcaccagaagtcaccgagccacaagttgttgagcca
caagtcgttgttgagccagcaccacaaccacaagttattccacaagcaccagagaccttc
gtcgagacctctgccccagttgcaccacaagtcactgagtacccaattccagcagcacaa
actgaggctccagaagaggtatacgaagaggagaccgacgcaccagtcgccgcaccagtc
caaccaacggaatcctctttcgaagaggtgaccgctgaggagacacctgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATTCGTCGAGCCAGTTACTGAGG 516 269 1012 Antisense
AGCCAGCTGAGCCACAAGTTGTTGA 489 83 1070 Antisense
GAGCCACAAGTTGTCGAGCCAGTTC 377 385 1093 Antisense
TTCAACCAGCACCAGAAGTCACCGA 414 685 1148 Antisense
AAGTCACCGAGCCACAAGTTGTTGA 452 155 1163 Antisense
CACAAGTCGTTGTTGAGCCAGCACC 13 195 1190 Antisense
CCACAAGTTATTCCACAAGCACCAG 552 275 1219 Antisense
CAGAGACCTTCGTCGAGACCTCTGC 56 207 1241 Antisense
GTCACTGAGTACCCAATTCCAGCAG 285 465 1282 Antisense
GTCCAACCAACGGAATCCTCTTTCG 481 475 1369 Antisense
GTGACCGCTGAGGAGACACCTGTAC 353 481 1399 Antisense
Sequence Source Affymetrix Proprietary Database