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[183236_at]

Description F58F6.7 /REP_DB=WormBase Gene ID /WP=CE17142 /TR=O44178 /GB=AAB88363.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 49      4grp_high_8_8 > 57      6grp_total > 49      4grp_total > 60      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 188.8
(2)
P 		139.2
(-0.9)
P 		204.9
(3)
P 		103.3
(-3)
M 		102
B 175.5
(3)
P 		153.9
(0.6)
A 		152.6
(0.5)
P 		120.7
(-3)
P 		55
C 165.6
(0.4)
P 		195.6
(3)
A 		185.6
(2.1)
A 		126.9
(-3)
M 		69
avr 176.6
(2.6) 		162.9
(1.3) 		181
(3) 		117
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 121.3
(-1.4)
P 		160.4
(1.4)
P 		99.4
(-3)
P 		110.6
(-2.2)
A 		181.8
(3)
P 		176.6
(2.6)
P 		82
B 173.7
(3)
P 		94.4
(-3)
A 		99.4
(-2.6)
A 		138.8
(0.4)
P 		145.1
(0.8)
P 		173.4
(3)
P 		79
C 202.2
(3)
P 		129.3
(-0.9)
P 		148.9
(0.1)
A 		90.4
(-3)
A 		139.7
(-0.4)
P 		147.1
(0)
P 		112
avr 165.7
(3) 		128
(-1.3) 		115.9
(-2.7) 		113.3
(-3) 		155.5
(1.8) 		165.7
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 68.7
(3)
P 		30.2
(-1.3)
P 		53.6
(1.3)
P 		15.1
(-3)
M 		54
B 56
(3)
P 		38
(-0.6)
A 		35.4
(-1.1)
P 		25.7
(-3)
P 		30
C 54.8
(1.6)
P 		56.2
(1.8)
A 		64.7
(3)
A 		21.4
(-3)
M 		43
avr 59.8
(3) 		41.5
(0.2) 		51.2
(1.7) 		20.7
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 22.4
(-2.9)
P 		57
(3)
P 		21.6
(-3)
P 		28
(-1.9)
A 		54.9
(2.6)
P 		43
(0.6)
P 		35
B 60.4
(2.4)
P 		31.4
(-1.9)
A 		24.1
(-3)
A 		36.8
(-1.1)
P 		58.9
(2.1)
P 		64.7
(3)
P 		41
C 75
(3)
P 		39.5
(-0.8)
P 		37.9
(-0.9)
A 		18.2
(-3)
A 		45.2
(-0.1)
P 		49.2
(0.3)
P 		57
avr 52.6
(2.9) 		42.6
(0.5) 		27.9
(-3) 		27.7
(-3) 		53
(3) 		52.3
(2.8) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183236_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10704
Sequence Type Exemplar sequence
Representative Public ID F58F6.7 NCBI
Target Description F58F6.7 /REP_DB=WormBase Gene ID /WP=CE17142 /TR=O44178 /GB=AAB88363.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067664(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067664 NCBI Caenorhabditis elegans F53H1.3 (F53H1.3) mRNA, complete cds. 10/11 A 
F53H1.3 ENSEMBL cdna:known chromosome:CEL140:IV:1329160:1339370:1 gene:F53H1.3 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017980 8/11 Cross Hyb Matching Probes None
GENEFINDER00000017986 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1338282-1339234(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53H1.3
Entrez Gene 176945 Entrez gene
SwissProt O45074 EMBL-EBI
WormBase CE31538 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260377_AT expressed protein at
CANINE_2:CFAAFFX.12467.1.S1_S_AT similar to F53H1.3 cfa
CHICKEN:GGA.13171.1.S1_S_AT similar to hypothetical protein FLJ34969 gga
CHICKEN:GGA.2300.1.S1_AT similar to hypothetical protein FLJ34969 gga
CHICKEN:GGA.6997.1.S1_S_AT similar to hypothetical protein FLJ34969 gga
CHICKEN:GGA.6997.2.S1_S_AT similar to hypothetical protein FLJ34969 gga
CHICKEN:GGAAFFX.3549.1.S1_AT similar to hypothetical protein FLJ34969 gga
CHICKEN:GGA.6997.2.A1_AT Similar to hypothetical protein FLJ34969 gga
HU35KSUBA:HUM_ALU_AT hypothetical protein FLJ34969 hs
HU35KSUBB:HUM_ALU_AT hypothetical protein FLJ34969 hs
HU35KSUBC:HUM_ALU_AT hypothetical protein FLJ34969 hs
HU35KSUBD:HUM_ALU_AT hypothetical protein FLJ34969 hs
HUGENEFL:HUM_ALU_AT hypothetical protein FLJ34969 hs
HC-G110:HUM_ALU_AT hypothetical protein FLJ34969 hs
HU35KSUBC:RC_T93865_AT hypothetical protein FLJ34969 hs
HU35KSUBC:RC_N52349_AT hypothetical protein FLJ34969 hs
HU35KSUBD:RC_AA291672_S_AT hypothetical protein FLJ34969 hs
HU35KSUBD:RC_AA287553_I_AT hypothetical protein FLJ34969 hs
HU35KSUBD:RC_AA287553_S_AT hypothetical protein FLJ34969 hs
U133_X3P:HS.99670.0.A1_3P_AT hypothetical protein FLJ34969 hs
HG-U133_PLUS_2:226965_AT hypothetical protein FLJ34969 hs
HG-U133B:226965_AT hypothetical protein FLJ34969 hs
HG-U95C:63303_AT hypothetical protein FLJ34969 hs
HG-U95D:70783_AT hypothetical protein FLJ34969 hs
MOUSE430_2:1437253_AT RIKEN cDNA A630054L15 gene mm
MOE430A:1437253_AT RIKEN cDNA A630054L15 gene mm
MOUSE430A_2:1437253_AT RIKEN cDNA A630054L15 gene mm
MOUSE430A_2:1451568_AT RIKEN cDNA A630054L15 gene mm
MOE430A:1451568_AT RIKEN cDNA A630054L15 gene mm
MOUSE430_2:1451568_AT RIKEN cDNA A630054L15 gene mm
MG-U74BV2:112108_AT RIKEN cDNA A630054L15 gene mm
RG-U34B:RC_AA851364_AT similar to RIKEN cDNA A630054L15; hypothetical protein MGC38041 (predicted) rn
RG-U34C:RC_AI235901_AT similar to RIKEN cDNA A630054L15; hypothetical protein MGC38041 (predicted) rn
RAE230A:1399150_AT similar to RIKEN cDNA A630054L15; hypothetical protein MGC38041 (predicted) rn
RAT230_2:1399150_AT similar to RIKEN cDNA A630054L15; hypothetical protein MGC38041 (predicted) rn
RAE230B:1383209_AT similar to RIKEN cDNA A630054L15; hypothetical protein MGC38041 (predicted) rn
RAT230_2:1383209_AT similar to RIKEN cDNA A630054L15; hypothetical protein MGC38041 (predicted) rn
RG-U34B:RC_AI045596_AT Similar to RIKEN cDNA A630054L15; hypothetical protein MGC38041 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAC02577 Hypothetical protein F53H1.3 [Caenorhabditis elegans] ref|NP_500065.2| F53H1.3 [Caenorhabditis elegans] 0.0
blast CAE68255 Hypothetical protein CBG13932 [Caenorhabditis briggsae] 0.0
blast XP_783119 PREDICTED: similar to putative protein, with at least 2 transmembrane domains, of eukaryotic origin (63.2 kD) (4C103) [Strongylocentrotus purpuratus] 1.0E-125
Sequence
Target Sequence 
>C. ELEGANS:183236_AT
gaatcccgagtactcggccattttcaatggacgactttctggcgacacttgagacgaatg
gaggaccttcactgacgtgtggaaccaaaggagactggcaagttgtaaaacaagcttttc
gattggaatttccattctttacgtgcaaaaaaaaaatcctaaaaattcaaaattttgaga
tttttcagttttttgcacgtaaaactgttgaaaggctctaccgccgtttcataacttgct
ccaactttggcggctggctttcaatgcgatcgcgtgacgtcaatgctcaactcaagacgc
attacgtggaagccctgtgctctgcggatttttgctcccaaacgcttgccacgaagcata
acgtggaaattgtggatttggtgcttcgaatacgcgaacgaattatcgaatgcccgccgg
acactgaaatccgccgaaatttggtccgccaagtcgtgaaaattctgtcaaacgtggacg
acgacctcaagcagttgctcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCCCGAGTACTCGGCCATTTTC 250 327 119 Antisense
AATGGACGACTTTCTGGCGACACTT 496 161 144 Antisense
GGACCTTCACTGACGTGTGGAACCA 572 523 181 Antisense
CTGTTGAAAGGCTCTACCGCCGTTT 62 223 323 Antisense
ATAACTTGCTCCAACTTTGGCGGCT 401 25 349 Antisense
TGCGATCGCGTGACGTCAATGCTCA 255 583 383 Antisense
GACGCATTACGTGGAAGCCCTGTGC 647 379 414 Antisense
GTGGATTTGGTGCTTCGAATACGCG 206 489 490 Antisense
CGCCGGACACTGAAATCCGCCGAAA 588 257 533 Antisense
GCCGAAATTTGGTCCGCCAAGTCGT 452 283 551 Antisense
ACGACGACCTCAAGCAGTTGCTCAT 434 93 596 Antisense
Sequence Source Affymetrix Proprietary Database