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[183235_at] 7TM chemoreceptor, srt family

Description K10B4.2 /REP_DB=WormBase Gene ID /WP=CE12064 /TR=O17238 /GB=AAB71006.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 35      4grp_high_8_8 > 19      6grp_total > 21      4grp_total > 28      6grp_cgc > 62      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 69.7
(-2)
P 		77.2
(-1)
P 		62.6
(-3)
P 		105.4
(3)
P 		43
B 88.4
(3)
P 		86.3
(2.8)
P 		30.1
(-3)
A 		50.4
(-0.9)
P 		58
C 99.7
(-0.1)
P 		89.9
(-0.6)
P 		41.5
(-3)
P 		161.1
(3)
P 		120
avr 85.9
(1.1) 		84.5
(0.9) 		44.7
(-3) 		105.6
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 92.7
(3)
P 		47.9
(-2.8)
P 		50.5
(-2.4)
P 		46.2
(-3)
P 		55.9
(-1.7)
M 		59.9
(-1.2)
P 		47
B 45.8
(-2.7)
M 		82
(3)
P 		63.8
(0.1)
P 		48.2
(-2.4)
A 		55.6
(-1.2)
P 		44.2
(-3)
M 		38
C 44.1
(-1)
P 		95.7
(3)
P 		69.7
(1)
P 		85.8
(2.2)
A 		18.7
(-3)
A 		18.1
(-3)
A 		78
avr 60.9
(0.5) 		75.2
(3) 		61.3
(0.6) 		60.1
(0.4) 		43.4
(-2.5) 		40.7
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 25.4
(3)
P 		16.8
(-2.2)
P 		16.4
(-2.4)
P 		15.4
(-3)
P 		10
B 28.2
(3)
P 		21.3
(1)
P 		7
(-3)
A 		10.7
(-2)
P 		21
C 33
(3)
P 		25.9
(0.7)
P 		14.5
(-3)
P 		27.2
(1.1)
P 		19
avr 28.9
(3) 		21.3
(0.2) 		12.6
(-3) 		17.8
(-1.1) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 17.1
(3)
P 		17
(2.9)
P 		11
(-3)
P 		11.7
(-2.3)
P 		16.9
(2.8)
M 		14.6
(0.5)
P 		6
B 15.9
(-1.7)
M 		27.3
(3)
P 		15.5
(-1.9)
P 		12.8
(-3)
A 		22.6
(1.1)
P 		16.5
(-1.5)
M 		15
C 16.3
(-0.4)
P 		29.2
(3)
P 		17.7
(0)
P 		17.3
(-0.1)
A 		6.1
(-3)
A 		6.1
(-3)
A 		23
avr 16.4
(-1) 		24.5
(3) 		14.7
(-1.9) 		13.9
(-2.3) 		15.2
(-1.6) 		12.4
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183235_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4209
Sequence Type Exemplar sequence
Representative Public ID K10B4.2 NCBI
Target Description K10B4.2 /REP_DB=WormBase Gene ID /WP=CE12064 /TR=O17238 /GB=AAB71006.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061264(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061264 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-54) (srt-54) mRNA, complete cds. 11/11 None
GENEFINDER00000039354 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:117216:118691:1 11/11 None
K10B4.2 ENSEMBL cdna:known chromosome:CEL140:II:117216:118691:1 gene:K10B4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039347 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:117215-118691(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-54
Ensembl K10B4.2
Entrez Gene 187250 Entrez gene
SwissProt O17238 EMBL-EBI
WormBase CE12064 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493665 Serpentine Receptor, class T family member (srt-54) [Caenorhabditis elegans] gb|AAB71006.1| Serpentine receptor, class t protein 54 [Caenorhabditis elegans] 0.0
blast CAB05638 Hypothetical protein W01D2.4 [Caenorhabditis elegans] ref|NP_497070.2| Serpentine Receptor, class T family member (srt-11) [Caenorhabditis elegans] 1.0E-65
blast AAB94164 Hypothetical protein E03D2.4 [Caenorhabditis elegans] ref|NP_504172.2| Serpentine Receptor, class T family member (srt-12) [Caenorhabditis elegans] 4.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 9.8E-113
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493665.1 7 42-64,76-98,113-135,156-178,205-227,248-270,274-296
K10B4.2 7 42-64,76-98,113-135,156-178,205-227,248-270,274-296
GENEFINDER00000039354 7 42-64,76-98,113-135,156-178,205-227,248-270,274-296
Sequence
Target Sequence 
>C. ELEGANS:183235_AT
gtgttggctgtataaccctctaattggaaaagatccattaatttattggagctttctcca
cactgtaaacaatagtgttatgacaattgtcataatcccgctaaacttatacttcgcttt
tcatctttttcgtaaacgctatgtactcagtcagtggtcttataaatccgccagacagat
aattggacaaactctgatcttatcagttttccactcctctgcagcatttatttatgaaat
aatgcaattcatctccccgggaccaggattttacattgccgggcaaattgcctggtctct
gtctagtggaagtgctggagtctcctatattttgttgaacaagactattaggcacaactt
gaaaaaggtttttctttcaaaagcaattcgaagccgatgtgggctttgttgttacgcaac
cgaggaattggttgctgaaaatgttcgaaaaatggcgcaaatgaacgacatgcaacaaat
tgctcctttttgggatggtgaaatatttaacggaggaaataatcaagggcatgataatca
gaataatgctataaaggaaccagctccacaaggtgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTGGCTGTATAACCCTCTAATT 150 485 564 Antisense
GAGCTTTCTCCACACTGTAAACAAT 16 389 612 Antisense
AATCCCGCTAAACTTATACTTCGCT 652 167 657 Antisense
ATACTTCGCTTTTCATCTTTTTCGT 8 25 672 Antisense
AACGCTATGTACTCAGTCAGTGGTC 448 145 698 Antisense
CTGATCTTATCAGTTTTCCACTCCT 450 237 757 Antisense
GAAATAATGCAATTCATCTCCCCGG 350 363 799 Antisense
GGACCAGGATTTTACATTGCCGGGC 270 523 823 Antisense
GCCTGGTCTCTGTCTAGTGGAAGTG 594 281 853 Antisense
GCCGATGTGGGCTTTGTTGTTACGC 323 283 956 Antisense
AAAGGAACCAGCTCCACAAGGTGCG 350 121 1116 Antisense
Sequence Source Affymetrix Proprietary Database