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[183234_s_at]

Description ZC449.2 /REP_DB=WormBase Gene ID /WP=CE27348 /TR=Q23327 /GB=AAK39384.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 58      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 23.4
(-1.9)
A 		108
(3)
A 		86.7
(1.8)
A 		4
(-3)
A 		104
B 27.2
(-1.4)
A 		77.4
(3)
A 		48.7
(0.5)
A 		9.4
(-3)
A 		68
C 32.4
(-1.7)
A 		72.8
(0.8)
A 		109.2
(3)
A 		10.3
(-3)
A 		99
avr 27.7
(-1.5) 		86.1
(3) 		81.5
(2.6) 		7.9
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 54.3
(-0.3)
A 		89.1
(1.7)
A 		112.2
(3)
P 		96.2
(2.1)
A 		74.9
(0.9)
A 		6.6
(-3)
A 		106
B 117.3
(3)
P 		95.6
(1.8)
P 		53.6
(-0.5)
A 		65.2
(0.2)
A 		68.9
(0.4)
A 		7.5
(-3)
A 		110
C 83.3
(0.3)
M 		123.1
(2.8)
A 		41.2
(-2.3)
A 		127
(3)
A 		41.9
(-2.3)
A 		29.8
(-3)
A 		97
avr 85
(1.8) 		102.6
(3) 		69
(0.7) 		96.1
(2.6) 		61.9
(0.2) 		14.6
(-3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 8.5
(-0.9)
A 		23.5
(3)
A 		22.7
(2.8)
A 		0.6
(-3)
A 		23
B 8.7
(-0.6)
A 		19.1
(3)
A 		11.3
(0.3)
A 		2
(-3)
A 		17
C 10.7
(-1.5)
A 		20.9
(0.2)
A 		38
(3)
A 		1.7
(-3)
A 		36
avr 9.3
(-0.9) 		21.2
(2.3) 		24
(3) 		1.4
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 10
(-1.3)
A 		31.7
(3)
A 		24.4
(1.5)
P 		24.4
(1.5)
A 		22.6
(1.2)
A 		1.6
(-3)
A 		30
B 40.8
(3)
P 		31.8
(1.6)
P 		13
(-1.4)
A 		17.3
(-0.7)
A 		28
(1)
A 		2.8
(-3)
A 		38
C 30.9
(1.5)
M 		37.6
(3)
A 		10.5
(-2.9)
A 		25.5
(0.4)
A 		13.5
(-2.2)
A 		10
(-3)
A 		28
avr 27.2
(1.7) 		33.7
(3) 		16
(-0.7) 		22.4
(0.7) 		21.4
(0.4) 		4.8
(-3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183234_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16094
Sequence Type Exemplar sequence
Representative Public ID ZC449.2 NCBI
Target Description ZC449.2 /REP_DB=WormBase Gene ID /WP=CE27348 /TR=Q23327 /GB=AAK39384.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076453(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076453 NCBI Caenorhabditis elegans ZC449.2 (ZC449.2) mRNA, complete cds. 11/11 None
GENEFINDER00000023565 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5021084:5024154:1 11/11 None
SNAP00000023552 ENSEMBL cdna:SNAP chromosome:CEL140:X:5022994:5024154:1 11/11 None
ZC449.2 ENSEMBL cdna:known chromosome:CEL140:X:5021182:5024203:1 gene:ZC449.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5022994-5024155(+) 89.86 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC449.2
Entrez Gene 180774 Entrez gene
SwissProt Q23327 EMBL-EBI
WormBase CE37687 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39384 Hypothetical protein ZC449.2 [Caenorhabditis elegans] ref|NP_508854.2| ZC449.2 [Caenorhabditis elegans] 0.0
blast T29916 hypothetical protein ZC449.2 - Caenorhabditis elegans 1.0E-128
blast T29916 hypothetical protein ZC449.2 - Caenorhabditis elegans 1.0E-110
blast CAE68681 Hypothetical protein CBG14589 [Caenorhabditis briggsae] 1.0E-108
blast AAK39384 Hypothetical protein ZC449.2 [Caenorhabditis elegans] ref|NP_508854.2| ZC449.2 [Caenorhabditis elegans] 1.0E-103
blast T29916 hypothetical protein ZC449.2 - Caenorhabditis elegans 1.0E-102
blast CAE68681 Hypothetical protein CBG14589 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 2.0E-7
Pfam IPR003014 EMBL-EBI N/apple PAN 1.2E-10
Pfam IPR003014 EMBL-EBI N/apple PAN 2.0E-7
Sequence
Target Sequence 
>C. ELEGANS:183234_S_AT
ggcagtcacctacaaaaacggaatgtgcgttcttcattccgtgtcaccatctgaagatga
atcgttacttcttgatggaagtggcaagactatggtgattgagaatggttgccatgtatc
aagtaatactaacaaatccgtgacaaagtccaaagaagattctgaagaaagcgagtcttc
ttggcaagaatggagtttgtgtcagtatggagtcaaagggagaaaaatgcgagttcgtca
acgagaatgcgatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAGTCACCTACAAAAACGGAATG 216 511 483 Antisense
GGAATGTGCGTTCTTCATTCCGTGT 81 533 502 Antisense
TCATTCCGTGTCACCATCTGAAGAT 592 619 516 Antisense
GATGAATCGTTACTTCTTGATGGAA 284 413 538 Antisense
GGAAGTGGCAAGACTATGGTGATTG 341 531 559 Antisense
GAATGGTTGCCATGTATCAAGTAAT 485 331 585 Antisense
CTAACAAATCCGTGACAAAGTCCAA 191 225 611 Antisense
GAAAGCGAGTCTTCTTGGCAAGAAT 486 359 649 Antisense
GGAGTTTGTGTCAGTATGGAGTCAA 328 517 674 Antisense
GGGAGAAAAATGCGAGTTCGTCAAC 701 239 700 Antisense
AGTTCGTCAACGAGAATGCGATGAT 674 61 714 Antisense
Sequence Source Affymetrix Proprietary Database