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[183233_at]

Description ZC449.2 /REP_DB=WormBase Gene ID /WP=CE27348 /TR=Q23327 /GB=AAK39384.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 42      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 65.4
(-1.8)
A 		64.4
(-1.9)
A 		100
(3)
A 		56.3
(-3)
A 		44
B 54.4
(-2.9)
A 		171.3
(3)
A 		73.2
(-2)
A 		52.9
(-3)
A 		118
C 40.5
(-3)
A 		123.8
(3)
A 		97.7
(1.1)
A 		113.4
(2.3)
A 		83
avr 53.4
(-3) 		119.8
(3) 		90.3
(0.3) 		74.2
(-1.1) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 132.1
(3)
M 		106.9
(0.9)
A 		101.5
(0.5)
A 		61.4
(-2.8)
A 		58.4
(-3)
A 		82.1
(-1.1)
A 		74
B 98.2
(2)
A 		95.7
(1.8)
A 		47.9
(-2.7)
A 		108.5
(3)
A 		44.9
(-3)
A 		53.1
(-2.2)
A 		64
C 79.8
(-0.5)
A 		123.1
(3)
M 		82.3
(-0.3)
A 		119.3
(2.7)
P 		50
(-3)
A 		49.9
(-3)
A 		73
avr 103.4
(2.5) 		108.6
(3) 		77.2
(-0.3) 		96.4
(1.7) 		51.1
(-3) 		61.7
(-1.9) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 23.8
(2.2)
A 		14
(-1.1)
A 		26.1
(3)
A 		8.2
(-3)
A 		18
B 17.3
(-1.8)
A 		42.3
(3)
A 		17
(-1.9)
A 		11.3
(-3)
A 		31
C 13.4
(-3)
A 		35.6
(3)
A 		34.1
(2.6)
A 		19.1
(-1.5)
A 		22
avr 18.2
(-1.2) 		30.6
(3) 		25.7
(1.3) 		12.9
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 24.4
(-0.6)
M 		38
(3)
A 		22.1
(-1.3)
A 		15.6
(-3)
A 		17.6
(-2.5)
A 		20
(-1.8)
A 		22
B 34.2
(3)
A 		31.9
(2.4)
A 		11.6
(-3)
A 		28.7
(1.5)
A 		18.3
(-1.2)
A 		19.8
(-0.8)
A 		23
C 29.6
(0.8)
A 		37.6
(3)
M 		20.9
(-1.7)
A 		24
(-0.8)
P 		16.2
(-3)
A 		16.7
(-2.9)
A 		21
avr 29.4
(0.9) 		35.8
(3) 		18.2
(-2.7) 		22.8
(-1.2) 		17.4
(-3) 		18.8
(-2.5) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183233_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16094
Sequence Type Exemplar sequence
Representative Public ID ZC449.2 NCBI
Target Description ZC449.2 /REP_DB=WormBase Gene ID /WP=CE27348 /TR=Q23327 /GB=AAK39384.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076453
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000023565 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5021084:5024154:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076453 6/11 Cross Hyb Matching Probes A 
SNAP00000023552 6/11 Cross Hyb Matching Probes None
ZC449.2 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5022994-5024155(+) 89.86 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39384 Hypothetical protein ZC449.2 [Caenorhabditis elegans] ref|NP_508854.2| ZC449.2 [Caenorhabditis elegans] 0.0
blast T29916 hypothetical protein ZC449.2 - Caenorhabditis elegans 1.0E-128
blast CAE68681 Hypothetical protein CBG14589 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 2.0E-7
Sequence
Target Sequence 
>C. ELEGANS:183233_AT
aagtgattctgcaacattggctattgatgacgagcataatttcggggacaagttttgcat
aaaaacaaaatatcactgtgatgcagagacattgtatccggtacatctttacaagaaact
catgaagaatattatcgcacgagttcctggacttgcctcgaaaatttcgtgcttatcaga
gtgcattgaaaatcgagaatgcaaggtgggaactgaaggttttcaaactggttccctgac
ctgtttcaaagcaggttcagccaaactcgcggtcttgcgtttcatgttgctccgttacac
tatttcactattggcagtcacctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGATTCTGCAACATTGGCTATT 46 159 171 Antisense
GATGCAGAGACATTGTATCCGGTAC 159 413 250 Antisense
GTATCCGGTACATCTTTACAAGAAA 516 455 264 Antisense
TTATCGCACGAGTTCCTGGACTTGC 597 679 302 Antisense
TCCTGGACTTGCCTCGAAAATTTCG 182 595 315 Antisense
GAAAATTTCGTGCTTATCAGAGTGC 417 353 330 Antisense
TGGTTCCCTGACCTGTTTCAAAGCA 297 551 399 Antisense
CAAAGCAGGTTCAGCCAAACTCGCG 4 191 417 Antisense
AACTCGCGGTCTTGCGTTTCATGTT 654 139 434 Antisense
TGTTGCTCCGTTACACTATTTCACT 265 563 455 Antisense
ATTTCACTATTGGCAGTCACCTACA 150 15 472 Antisense
Sequence Source Affymetrix Proprietary Database