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[183232_s_at]

Description K01A2.3 /REP_DB=WormBase Gene ID /WP=CE21010 /TR=Q9TZ53 /GB=AAC69512.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 04      4grp_high_8_8 > 50      6grp_highest_nonorm > 40      6grp_total > 24      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1076
1 2 3 4 range
A 1115.6
(3)
P 		603.5
(0.1)
P 		659
(0.4)
P 		44.6
(-3)
A 		1071
B 916.5
(3)
P 		754.2
(1.9)
P 		485.8
(-0)
P 		56.2
(-3)
P 		860
C 1077.3
(3)
P 		697.8
(0.8)
P 		667.9
(0.6)
P 		39.8
(-3)
P 		1038
avr 1036.5
(3) 		685.2
(0.9) 		604.2
(0.4) 		46.9
(-3) 		990

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 857
1 2 3 4 5 6 range
A 961.8
(3)
P 		911.4
(2.6)
P 		611.5
(0.3)
P 		355.9
(-1.7)
P 		297.2
(-2.2)
P 		194.6
(-3)
P 		767
B 1029.7
(3)
P 		661.3
(0.4)
P 		532.6
(-0.6)
P 		334.4
(-2)
P 		295.9
(-2.3)
P 		195.2
(-3)
P 		835
C 900.9
(3)
P 		865.6
(2.7)
P 		609.9
(0.6)
P 		342.9
(-1.6)
P 		265.7
(-2.2)
P 		172.5
(-3)
P 		728
avr 964.1
(3) 		812.8
(1.8) 		584.7
(0.1) 		344.4
(-1.8) 		286.3
(-2.2) 		187.4
(-3) 		777
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 400
1 2 3 4 range
A 406.2
(3)
P 		131
(-1.1)
P 		172.3
(-0.5)
P 		6.5
(-3)
A 		400
B 292.3
(3)
P 		186.3
(0.7)
P 		112.6
(-0.8)
P 		12
(-3)
P 		280
C 356.6
(3)
P 		200.6
(0.3)
P 		232.8
(0.9)
P 		6.7
(-3)
P 		350
avr 351.7
(3) 		172.6
(-0.1) 		172.6
(-0.1) 		8.4
(-3) 		343

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 311
1 2 3 4 5 6 range
A 177.3
(-0.2)
P 		324.1
(3)
P 		133.2
(-1.1)
P 		90.3
(-2.1)
P 		89.7
(-2.1)
P 		47.4
(-3)
P 		277
B 358.3
(3)
P 		220.1
(0.1)
P 		129.3
(-1.8)
P 		88.6
(-2.7)
P 		120.2
(-2)
P 		72.8
(-3)
P 		286
C 333.9
(3)
P 		264.1
(1.5)
P 		155.2
(-0.9)
P 		69
(-2.8)
P 		86
(-2.4)
P 		57.7
(-3)
P 		276
avr 289.8
(3) 		269.4
(2.5) 		139.2
(-0.9) 		82.6
(-2.4) 		98.6
(-2) 		59.3
(-3) 		231
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183232_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4886
Sequence Type Exemplar sequence
Representative Public ID K01A2.3 NCBI
Target Description K01A2.3 /REP_DB=WormBase Gene ID /WP=CE21010 /TR=Q9TZ53 /GB=AAC69512.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027056(11), NM_001027057(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027056 NCBI Caenorhabditis elegans K01A2.3 (K01A2.3) mRNA, complete cds. 11/11 None
NM_001027057 NCBI Caenorhabditis elegans K01A2.4 (K01A2.4) mRNA, complete cds. 11/11 None
GENEFINDER00000016843 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:307544:309283:1 11/11 None
GENEFINDER00000016845 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:314124:315618:1 11/11 None
K01A2.4 ENSEMBL cdna:known chromosome:CEL140:II:307544:309058:1 gene:K01A2.4 11/11 A 
K01A2.3 ENSEMBL cdna:known chromosome:CEL140:II:315049:315783:1 gene:K01A2.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016834 7/11 Cross Hyb Matching Probes None
SNAP00000016836 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:315025-315783(+) 100.0 100.0
chrII:308689-309448(+) 98.44 98.44
Public Domain and Genome References
Gene Title

Ensembl K01A2.4
K01A2.3
Entrez Gene 173420 Entrez gene
3565272 Entrez gene
SwissProt Q7KNR0 EMBL-EBI
WormBase CE29422 Wormbase
CE39022 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAR12970 Hypothetical protein K01A2.4 [Caenorhabditis elegans] 1.0E-103
blast NP_001022228 K01A2.4 [Caenorhabditis elegans] 1.0E-100
blast AAR12970 Hypothetical protein K01A2.4 [Caenorhabditis elegans] 1.0E-100
blast T33642 hypothetical protein K01A2.4 - Caenorhabditis elegans 1.0E-92
blast NP_001022228 K01A2.4 [Caenorhabditis elegans] 2.0E-88
blast AAR12970 Hypothetical protein K01A2.4 [Caenorhabditis elegans] 1.0E-85
blast T33642 hypothetical protein K01A2.4 - Caenorhabditis elegans 1.0E-80
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022227.1 3 22-44,57-76,91-113
NP_001022228.1 2 142-164,174-196
K01A2.4 2 142-164,174-196
K01A2.3 3 22-44,57-76,91-113
GENEFINDER00000016843 3 163-182,197-219,232-254
GENEFINDER00000016845 3 182-201,216-238,251-273
Sequence
Target Sequence 
>C. ELEGANS:183232_S_AT
gaaactcctcattggacacggtatctcgtttttaattcatgtcattatgacctatacctt
gtttcttgaatggtacaatgcaatcgatccaaaaattactgtagttggagctattattct
gatggttttcgtcttgtgtttattacttctcgcgttcggcggcttcgtctggatgttgca
cggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTCCTCATTGGACACGGTATC 438 357 57 Antisense
CATTGGACACGGTATCTCGTTTTTA 277 217 66 Antisense
GTATCTCGTTTTTAATTCATGTCAT 288 453 77 Antisense
GTCATTATGACCTATACCTTGTTTC 289 467 97 Antisense
TGACCTATACCTTGTTTCTTGAATG 146 569 104 Antisense
GGTACAATGCAATCGATCCAAAAAT 627 503 128 Antisense
AATCGATCCAAAAATTACTGTAGTT 529 167 138 Antisense
ATTATTCTGATGGTTTTCGTCTTGT 690 13 169 Antisense
GATGGTTTTCGTCTTGTGTTTATTA 645 405 177 Antisense
GTCTTGTGTTTATTACTTCTCGCGT 200 469 187 Antisense
GGCTTCGTCTGGATGTTGCACGGAA 11 539 217 Antisense
Sequence Source Affymetrix Proprietary Database