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[183230_at]

Description R02E4.1 /REP_DB=WormBase Gene ID /WP=CE04777 /TR=Q21646 /GB=AAA81760.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      6grp_highest_nonorm > 64      6grp_total > 84      4grp_total > 48      6grp_highest_sub > 04_05      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1211
1 2 3 4 range
A 29.6
(-3)
A 		798.1
(1.2)
P 		1123.7
(3)
P 		103.1
(-2.6)
A 		1094
B 6.8
(-3)
A 		753
(0.7)
P 		1217.4
(3)
P 		101
(-2.5)
A 		1211
C 8.1
(-3)
A 		827.5
(1.2)
P 		1187.3
(3)
P 		140.6
(-2.3)
A 		1179
avr 14.8
(-3) 		792.9
(1) 		1176.1
(3) 		114.9
(-2.5) 		1161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1327
1 2 3 4 5 6 range
A 475.4
(-3)
P 		505.5
(-2.8)
P 		754.6
(-1.4)
P 		1493.2
(3)
P 		1159.5
(1)
P 		841.2
(-0.8)
P 		1018
B 488.7
(-3)
P 		591
(-2.5)
P 		844.3
(-1.4)
P 		743.6
(-1.8)
P 		1802.1
(3)
P 		723.9
(-1.9)
P 		1313
C 487.8
(-3)
P 		641.5
(-1.9)
P 		526.1
(-2.7)
P 		1185.2
(2.1)
P 		1301.7
(3)
P 		1262.3
(2.7)
P 		814
avr 484
(-3) 		579.3
(-2.4) 		708.3
(-1.6) 		1140.7
(1.2) 		1421.1
(3) 		942.5
(-0.1) 		937
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 412
1 2 3 4 range
A 10.8
(-3)
A 		173.2
(0.4)
P 		293.8
(3)
P 		15.1
(-2.9)
A 		283
B 2.2
(-3)
A 		186
(0.9)
P 		282.1
(3)
P 		21.5
(-2.6)
A 		280
C 2.7
(-3)
A 		237.9
(0.4)
P 		413.8
(3)
P 		23.7
(-2.7)
A 		411
avr 5.2
(-3) 		199
(0.6) 		329.9
(3) 		20.1
(-2.7) 		325

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 645
1 2 3 4 5 6 range
A 87.6
(-3)
P 		179.8
(-1.1)
P 		164.3
(-1.4)
P 		378.7
(3)
P 		349.9
(2.4)
P 		204.8
(-0.6)
P 		291
B 170.1
(-3)
P 		196.7
(-2.7)
P 		205
(-2.6)
P 		197
(-2.7)
P 		732.2
(3)
P 		270
(-1.9)
P 		562
C 180.8
(-2)
P 		195.7
(-1.7)
P 		133.9
(-3)
P 		238.3
(-0.8)
P 		421.2
(3)
P 		422.6
(3)
P 		289
avr 146.2
(-3) 		190.7
(-2.2) 		167.7
(-2.6) 		271.3
(-0.9) 		501.1
(3) 		299.1
(-0.4) 		355
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183230_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16093
Sequence Type Exemplar sequence
Representative Public ID R02E4.1 NCBI
Target Description R02E4.1 /REP_DB=WormBase Gene ID /WP=CE04777 /TR=Q21646 /GB=AAA81760.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076296(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076296 NCBI Caenorhabditis elegans R02E4.1 (R02E4.1) mRNA, complete cds. 11/11 None
R02E4.1 ENSEMBL cdna:known chromosome:CEL140:X:4100689:4104495:-1 gene:R02E4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035165 6/11 Cross Hyb Matching Probes None
GENEFINDER00000035169 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4100689-4104496(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02E4.1
Entrez Gene 187524 Entrez gene
SwissProt Q21646 EMBL-EBI
WormBase CE04777 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508697 R02E4.1 [Caenorhabditis elegans] gb|AAA81760.1| Hypothetical protein R02E4.1 [Caenorhabditis elegans] 0.0
blast CAE68518 Hypothetical protein CBG14340 [Caenorhabditis briggsae] 1.0E-25
Sequence
Target Sequence 
>C. ELEGANS:183230_AT
aaaccggagtttcgagcaaggatgtttcaactctcaaagaattggcagaacttgagaagc
atcaggatgctgctaaggctaatgaacagaacttgaaaactgaagcggagacaaaagaag
aacagaatcaagaagaggtacagaaatctctagttgtggatgctatccattctgccaaag
caaaatgggatcaatgcttcttgaaaccagacaactgctgtgtggtagacttatgtttaa
atattttaaaaatttgttatacatacgctcagaaacatcaagaacattgtggggcaatcc
taatgaggttgatatatacatatttctcagatattgcattttgtaaagatataattcaat
tgttaagattcaactgcgggttagctaatcttttgaaaagtgtttcaaaactcgaaaaca
gtggaggactacgtcagaccttgcattccaccagattcacgtgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCGGAGTTTCGAGCAAGGATGT 16 125 884 Antisense
GCAAGGATGTTTCAACTCTCAAAGA 470 321 899 Antisense
GCATCAGGATGCTGCTAAGGCTAAT 80 307 942 Antisense
GAAATCTCTAGTTGTGGATGCTATC 578 361 1026 Antisense
TGGATGCTATCCATTCTGCCAAAGC 31 551 1040 Antisense
GGATCAATGCTTCTTGAAACCAGAC 276 511 1071 Antisense
AGACAACTGCTGTGTGGTAGACTTA 169 71 1092 Antisense
ATTGTGGGGCAATCCTAATGAGGTT 117 3 1169 Antisense
AACTGCGGGTTAGCTAATCTTTTGA 572 141 1255 Antisense
GAGGACTACGTCAGACCTTGCATTC 238 403 1307 Antisense
TGCATTCCACCAGATTCACGTGCAC 272 579 1325 Antisense
Sequence Source Affymetrix Proprietary Database