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[183229_s_at]

Description ZK1010.5 /REP_DB=WormBase Gene ID /WP=CE15503 /TR=O18284 /GB=CAB04971.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 50      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 11.1
(-3)
A 		82.3
(1.7)
A 		102.3
(3)
A 		66.4
(0.6)
A 		91
B 62.7
(2.9)
A 		63.2
(3)
A 		41.1
(0.6)
A 		7.7
(-3)
A 		56
C 45.4
(-1.8)
A 		134.8
(3)
A 		66.5
(-0.7)
A 		23
(-3)
A 		112
avr 39.7
(-2.3) 		93.4
(3) 		70
(0.7) 		32.4
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 114.7
(-0.6)
A 		23.9
(-3)
A 		78.1
(-1.5)
A 		59.6
(-2)
M 		131.8
(-0.1)
P 		247.3
(3)
P 		223
B 92.4
(-0.6)
A 		33.1
(-3)
A 		41.8
(-2.7)
A 		61.8
(-1.9)
A 		120.8
(0.5)
P 		183.3
(3)
P 		150
C 62.7
(-2.1)
A 		44.7
(-3)
M 		67
(-1.9)
A 		60.9
(-2.2)
A 		131.7
(1.2)
P 		169.5
(3)
P 		125
avr 89.9
(-1) 		33.9
(-3) 		62.3
(-2) 		60.8
(-2) 		128.1
(0.4) 		200
(3) 		166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 4.1
(-3)
A 		17.9
(0.7)
A 		26.7
(3)
A 		9.7
(-1.5)
A 		23
B 20
(3)
A 		15.6
(1.6)
A 		9.5
(-0.4)
A 		1.6
(-3)
A 		18
C 15
(-1.1)
A 		38.8
(3)
A 		23.2
(0.3)
A 		3.9
(-3)
A 		35
avr 13
(-0.5) 		24.1
(3) 		19.8
(1.6) 		5.1
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 21.1
(-1.5)
A 		8.5
(-3)
A 		17
(-2)
A 		15.1
(-2.2)
M 		39.8
(0.6)
P 		60.2
(3)
P 		52
B 32.1
(-0.7)
A 		11
(-2.9)
A 		10.1
(-3)
A 		16.4
(-2.4)
A 		49.1
(1)
P 		68.4
(3)
P 		58
C 23.3
(-1.5)
A 		13.6
(-2.8)
M 		17.1
(-2.4)
A 		12.3
(-3)
A 		42.6
(1.1)
P 		56.7
(3)
P 		44
avr 25.5
(-1.3) 		11
(-3) 		14.7
(-2.6) 		14.6
(-2.6) 		43.8
(0.9) 		61.8
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183229_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6730
Sequence Type Exemplar sequence
Representative Public ID ZK1010.5 NCBI
Target Description ZK1010.5 /REP_DB=WormBase Gene ID /WP=CE15503 /TR=O18284 /GB=CAB04971.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067297(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067297 NCBI Caenorhabditis elegans ZK1010.5 (ZK1010.5) mRNA, complete cds. 11/11 None
SNAP00000035101 ENSEMBL cdna:SNAP chromosome:CEL140:III:12984057:12993209:-1 11/11 None
GENEFINDER00000035115 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12984057:12986909:-1 11/11 None
ZK1010.5 ENSEMBL cdna:known chromosome:CEL140:III:12984018:12987018:-1 gene:ZK1010.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12984052-12986905(-) 96.96 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1010.5
Entrez Gene 176720 Entrez gene
SwissProt O18284 EMBL-EBI
WormBase CE15503 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04971 Hypothetical protein ZK1010.5 [Caenorhabditis elegans] ref|NP_499698.1| ZK1010.5 [Caenorhabditis elegans] 0.0
blast CAB04973 Hypothetical protein ZK1010.7 [Caenorhabditis elegans] ref|NP_499700.1| ZK1010.7 [Caenorhabditis elegans] 5.0E-62
blast CAE69571 Hypothetical protein CBG15783 [Caenorhabditis briggsae] 2.0E-61
blast XP_784086 PREDICTED: similar to mucin 19 [Strongylocentrotus purpuratus] 1.0E-27
blast XP_793965 PREDICTED: similar to mucin 19, partial [Strongylocentrotus purpuratus] 2.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR002486 EMBL-EBI Nematode cuticle collagen, N-terminal 3.9E-8
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 3.1E-4
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 1.4E-6
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 8.6E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499698.1 1 714-736
ZK1010.5 1 714-736
SNAP00000035101 2 13-35,1046-1068
GENEFINDER00000035115 1 714-736
Sequence
Target Sequence 
>C. ELEGANS:183229_S_AT
acagcttcaacagcattgcctgacgagacaacagatgccccagaggagcctgctaccgaa
gttccaaatccacagccaccatcaccaccatcaccagagccagagccagagccaaagtca
acgccagaaccagtcacggatggtccgaacgaatcgcaatctacagcactgcctcagcag
acaacagatgccccagtggatcctgtcaccgaggcttcgcctcttaatccacagccacca
ccgccaccatcaccatcacctgaaccagagccagaaccaaagccaccagtgactccaccc
aaaaatgaaaccgtcgatccggtccacgaaaacggaacttctggcgaaaaggatggaact
cctgaagcacaaccactgaagagttcgagcaataaaaaaacacaggcagaaaaggatgag
gaggagttgaagaagagagtgtttgctgccgagcttggaaccggaagtgtccttgttgca
accagtattgccgcctacgtagcttcgtacatggcctacacctacgtgaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGCTTCAACAGCATTGCCTGACG 696 107 1693 Antisense
TGACGAGACAACAGATGCCCCAGAG 677 565 1713 Antisense
CTGCTACCGAAGTTCCAAATCCACA 701 237 1742 Antisense
AGAGCCAGAGCCAAAGTCAACGCCA 70 71 1794 Antisense
TCAACGCCAGAACCAGTCACGGATG 565 629 1810 Antisense
GAATCGCAATCTACAGCACTGCCTC 497 329 1843 Antisense
CAACAGATGCCCCAGTGGATCCTGT 208 189 1874 Antisense
AGTGTTTGCTGCCGAGCTTGGAACC 407 59 2130 Antisense
GAAGTGTCCTTGTTGCAACCAGTAT 629 335 2156 Antisense
GCCTACGTAGCTTCGTACATGGCCT 707 277 2185 Antisense
TACATGGCCTACACCTACGTGAAGA 530 639 2200 Antisense
Sequence Source Affymetrix Proprietary Database