[Home] | [Total List]

[183228_at]

Description C17C3.5 /REP_DB=WormBase Gene ID /WP=CE04025 /TR=Q18059 /GB=AAK31419.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 2.4
(-3)
A 		3.2
(-2.9)
A 		7.2
(-2.4)
A 		53.7
(3)
A 		51
B 1.6
(-3)
A 		6.3
(3)
A 		2.8
(-1.5)
A 		2.4
(-2)
A 		5
C 7.3
(-2.7)
A 		3.8
(-3)
A 		5.3
(-2.9)
A 		79.5
(3)
A 		76
avr 3.8
(-3) 		4.4
(-2.9) 		5.1
(-2.8) 		45.2
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 4.1
(-2.8)
A 		1.7
(-3)
A 		8
(-2.4)
A 		2.8
(-2.9)
A 		61.3
(3)
A 		50.4
(1.9)
A 		60
B 2.5
(-3)
A 		6.5
(-2.1)
A 		2.6
(-3)
A 		6
(-2.2)
A 		28.8
(3)
A 		26.2
(2.4)
A 		26
C 4.3
(-2.7)
A 		24.9
(1.5)
A 		10
(-1.6)
A 		2.9
(-3)
A 		32.4
(3)
A 		26.8
(1.9)
A 		30
avr 3.6
(-3) 		11
(-1.8) 		6.9
(-2.5) 		3.9
(-3) 		40.8
(3) 		34.5
(2) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.9
(-2.8)
A 		0.7
(-3)
A 		1.9
(-2)
A 		7.9
(3)
A 		7
B 0.5
(-3)
A 		1.6
(3)
A 		0.7
(-1.9)
A 		0.5
(-3)
A 		1
C 2.4
(-2.4)
A 		1.1
(-3)
A 		1.9
(-2.6)
A 		13.4
(3)
A 		12
avr 1.3
(-2.8) 		1.1
(-3) 		1.5
(-2.6) 		7.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		0.6
(-3)
A 		1.7
(-2.6)
A 		0.7
(-3)
A 		18.5
(3)
A 		12.3
(0.9)
A 		18
B 0.9
(-2.8)
A 		2.2
(-2.1)
A 		0.6
(-3)
A 		1.6
(-2.5)
A 		11.7
(3)
A 		9.8
(2)
A 		11
C 1.6
(-2.4)
A 		7.6
(1.2)
A 		2.6
(-1.8)
A 		0.6
(-3)
A 		10.5
(3)
A 		9
(2.1)
A 		10
avr 1.1
(-3) 		3.5
(-1.8) 		1.6
(-2.7) 		1
(-3) 		13.6
(3) 		10.4
(1.5) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183228_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5524
Sequence Type Exemplar sequence
Representative Public ID C17C3.5 NCBI
Target Description C17C3.5 /REP_DB=WormBase Gene ID /WP=CE04025 /TR=Q18059 /GB=AAK31419.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062669(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062669 NCBI Caenorhabditis elegans C17C3.5 (C17C3.5) mRNA, complete cds. 11/11 None
SNAP00000005291 ENSEMBL cdna:SNAP chromosome:CEL140:II:5550016:5552288:1 11/11 None
GENEFINDER00000005301 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5551905:5552288:1 11/11 None
C17C3.5 ENSEMBL cdna:known chromosome:CEL140:II:5551905:5552288:1 gene:C17C3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5551902-5552286(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17C3.5
Entrez Gene 182715 Entrez gene
SwissProt Q18059 EMBL-EBI
WormBase CE04025 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31419 Hypothetical protein C17C3.5 [Caenorhabditis elegans] ref|NP_495070.1| C17C3.5 [Caenorhabditis elegans] 7.0E-59
blast AAK31419 Hypothetical protein C17C3.5 [Caenorhabditis elegans] ref|NP_495070.1| C17C3.5 [Caenorhabditis elegans] 6.0E-58
blast CAB54329 Hypothetical protein Y113G7B.7 [Caenorhabditis elegans] ref|NP_507897.1| Y113G7B.7 [Caenorhabditis elegans] 2.0E-55
blast CAB54328 Hypothetical protein Y113G7B.6 [Caenorhabditis elegans] ref|NP_507898.1| Y113G7B.6 [Caenorhabditis elegans] 4.0E-54
blast CAB54329 Hypothetical protein Y113G7B.7 [Caenorhabditis elegans] ref|NP_507897.1| Y113G7B.7 [Caenorhabditis elegans] 4.0E-13
blast CAB54328 Hypothetical protein Y113G7B.6 [Caenorhabditis elegans] ref|NP_507898.1| Y113G7B.6 [Caenorhabditis elegans] 2.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.4E-40
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.3E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.7E-17
Sequence
Target Sequence 
>C. ELEGANS:183228_AT
attttcccatcgaacagttgtcgcatttaatttccttcgacatcgaatggaccgagacat
cagttgctgacgcgatcaagattaaagatattatcttgcgatcccctcactttgagtcag
catcaattctttctcactgtgttaacaaaattaaaccggaagttttgaaagtctttcatc
caaactacattgctaccgaccgtgactacaatgaaatgttagaactgcgaaatgattact
tcagatccatcgtctacgctggtggttctagcattgatatctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTCCCATCGAACAGTTGTCGCA 557 13 26 Antisense
CGCATTTAATTTCCTTCGACATCGA 250 255 47 Antisense
GAATGGACCGAGACATCAGTTGCTG 563 331 70 Antisense
CATCAGTTGCTGACGCGATCAAGAT 41 213 83 Antisense
ATCCCCTCACTTTGAGTCAGCATCA 242 39 126 Antisense
GTCAGCATCAATTCTTTCTCACTGT 234 467 141 Antisense
CATCCAAACTACATTGCTACCGACC 641 207 202 Antisense
GCTACCGACCGTGACTACAATGAAA 306 295 217 Antisense
TGATTACTTCAGATCCATCGTCTAC 39 565 258 Antisense
CATCGTCTACGCTGGTGGTTCTAGC 22 213 273 Antisense
GGTGGTTCTAGCATTGATATCTACA 379 499 286 Antisense
Sequence Source Affymetrix Proprietary Database