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[183226_at]

Description C12D5.4 /REP_DB=WormBase Gene ID /WP=CE06806 /TR=Q17925 /GB=AAA98568.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 12.7
(-3)
A 		25.5
(-2.7)
A 		77.1
(-1.6)
A 		282.6
(3)
A 		270
B 16.7
(-2.9)
A 		38
(-1.7)
A 		14
(-3)
A 		124.2
(3)
A 		110
C 31.7
(-2.3)
A 		38.3
(-2.1)
A 		6.9
(-3)
A 		223
(3)
A 		216
avr 20.4
(-3) 		33.9
(-2.6) 		32.7
(-2.6) 		209.9
(3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 38.7
(-2.5)
A 		90.1
(0.1)
A 		144.9
(3)
A 		141.8
(2.8)
A 		55.1
(-1.7)
A 		29.9
(-3)
A 		115
B 20.8
(-2.8)
A 		107.5
(0.8)
A 		91.3
(0.1)
A 		160.9
(3)
A 		60.8
(-1.2)
A 		16.6
(-3)
A 		144
C 18.7
(-3)
A 		167.4
(3)
A 		74.3
(-0.8)
A 		80.9
(-0.5)
A 		19.1
(-3)
A 		38.7
(-2.2)
A 		149
avr 26.1
(-3) 		121.7
(2.6) 		103.5
(1.6) 		127.9
(3) 		45
(-1.9) 		28.4
(-2.9) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 4.6
(-3)
A 		5.5
(-2.9)
A 		20.2
(-0.5)
A 		41.4
(3)
A 		37
B 5.3
(-2.5)
A 		9.4
(-1.4)
A 		3.2
(-3)
A 		26.5
(3)
A 		23
C 10.5
(-1.6)
A 		11
(-1.5)
A 		2.4
(-3)
A 		37.6
(3)
A 		35
avr 6.8
(-3) 		8.6
(-2.6) 		8.6
(-2.6) 		35.2
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 7.1
(-3)
A 		32
(2.2)
A 		31.6
(2.1)
A 		36
(3)
A 		16.6
(-1)
A 		7.3
(-3)
A 		29
B 7.2
(-2.8)
A 		35.8
(1.9)
A 		22.2
(-0.4)
A 		42.6
(3)
A 		24.7
(0)
A 		6.2
(-3)
A 		36
C 6.9
(-2.9)
A 		51.1
(3)
A 		18.9
(-1.3)
A 		16.3
(-1.7)
A 		6.2
(-3)
A 		13
(-2.1)
A 		45
avr 7.1
(-3) 		39.6
(3) 		24.2
(0.2) 		31.6
(1.5) 		15.8
(-1.4) 		8.8
(-2.7) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183226_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11302
Sequence Type Exemplar sequence
Representative Public ID C12D5.4 NCBI
Target Description C12D5.4 /REP_DB=WormBase Gene ID /WP=CE06806 /TR=Q17925 /GB=AAA98568.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072584(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072584 NCBI Caenorhabditis elegans C12D5.4 (C12D5.4) mRNA, complete cds. 11/11 None
C12D5.4 ENSEMBL cdna:known chromosome:CEL140:V:7674681:7675638:1 gene:C12D5.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021439 7/11 Cross Hyb Matching Probes None
GENEFINDER00000021451 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7674681-7675639(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C12D5.4
Entrez Gene 182535 Entrez gene
SwissProt Q17925 EMBL-EBI
WormBase CE06806 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA98568 Hypothetical protein C12D5.4 [Caenorhabditis elegans] ref|NP_504985.1| C12D5.4 [Caenorhabditis elegans] 3.0E-91
blast AAA98570 Hypothetical protein C12D5.3 [Caenorhabditis elegans] ref|NP_504987.1| C12D5.3 [Caenorhabditis elegans] 2.0E-21
blast AAA98567 Hypothetical protein C12D5.5 [Caenorhabditis elegans] ref|NP_504984.1| C12D5.5 [Caenorhabditis elegans] 1.0E-20
Sequence
Target Sequence 
>C. ELEGANS:183226_AT
gaccacccggcaatttttatatctcaaacattattgctcatgttgagaagtcttcaaaaa
ttgacagcgccagtgatgtatttgttccaatttccaactcaatttcttcaattcatctaa
tattcttgcatgatcacttctcatttctattctcccatcaggatatattgtttcttttta
tctcatcagagctcctcaccgccattgcggcaactaaaagcgccaatggaatccagtgct
gggtgagcaatgaaggaactgtaagcccccgagtggtttcaaatcaactcgggtgcttgt
cgctctttcaaaccgaagatcgagttgcctcgttcggtggtgtcccatcaactccacgca
ccgcccaccgtcaagctgaattggccatggctgatggatcctgcaagaagattgaaaagc
tcgtgtaccaggccgacaaaacaaacgactacgcttcagtctacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCACCCGGCAATTTTTATATCTC 61 383 17 Antisense
CAGCGCCAGTGATGTATTTGTTCCA 311 203 81 Antisense
TCATTTCTATTCTCCCATCAGGATA 641 619 157 Antisense
TTTTTATCTCATCAGAGCTCCTCAC 523 675 191 Antisense
TGTAAGCCCCCGAGTGGTTTCAAAT 541 545 276 Antisense
CAAATCAACTCGGGTGCTTGTCGCT 161 193 296 Antisense
TGCTTGTCGCTCTTTCAAACCGAAG 548 577 310 Antisense
GAAGATCGAGTTGCCTCGTTCGGTG 405 335 331 Antisense
GCCCACCGTCAAGCTGAATTGGCCA 145 283 379 Antisense
TGAAAAGCTCGTGTACCAGGCCGAC 533 573 429 Antisense
CAAACGACTACGCTTCAGTCTACCT 93 193 458 Antisense
Sequence Source Affymetrix Proprietary Database