[Home] | [Total List]

[183224_at]

Description F43C9.3 /REP_DB=WormBase Gene ID /WP=CE04566 /TR=Q20357 /GB=AAA81467.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 32      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 17.5
(-3)
A 		21.3
(-2)
A 		39.5
(3)
A 		33.5
(1.4)
A 		22
B 30.5
(3)
A 		24.9
(1.1)
A 		29.3
(2.6)
A 		12.7
(-3)
A 		18
C 34.1
(-3)
A 		46.2
(-0.3)
A 		47.3
(-0.1)
A 		61.4
(3)
A 		27
avr 27.4
(-3) 		30.8
(-1.2) 		38.7
(3) 		35.9
(1.5) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 13.4
(-1.7)
A 		6.5
(-3)
A 		38.5
(3)
A 		30.3
(1.5)
A 		23.9
(0.3)
A 		11.7
(-2)
A 		32
B 29.5
(-0.2)
A 		31.1
(0.4)
A 		39
(3)
A 		24.9
(-1.7)
A 		21
(-3)
A 		24.2
(-1.9)
A 		18
C 12.7
(-2.3)
A 		64.7
(3)
M 		17.6
(-1.8)
A 		33
(-0.3)
A 		29.4
(-0.6)
A 		6.2
(-3)
A 		59
avr 18.5
(-1.7) 		34.1
(3) 		31.7
(2.3) 		29.4
(1.6) 		24.8
(0.2) 		14
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.4
(-1.1)
A 		4.6
(-3)
A 		10.3
(3)
A 		4.9
(-2.7)
A 		6
B 9.7
(3)
A 		6.2
(0)
A 		6.8
(0.5)
A 		2.7
(-3)
A 		7
C 11.3
(-2)
A 		13.3
(-0.1)
A 		16.5
(3)
A 		10.3
(-3)
A 		6
avr 9.1
(0.6) 		8
(-0.7) 		11.2
(3) 		6
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.5
(-2.8)
A 		2.3
(-3)
A 		8.4
(3)
A 		7.7
(2.3)
A 		7.2
(1.8)
A 		2.8
(-2.5)
A 		6
B 10.3
(2.8)
A 		10.4
(3)
A 		9.5
(1.6)
A 		6.6
(-3)
A 		8.5
(0)
A 		9
(0.8)
A 		4
C 4.7
(-2.1)
A 		19.7
(3)
M 		4.5
(-2.2)
A 		6.6
(-1.5)
A 		9.5
(-0.5)
A 		2.1
(-3)
A 		18
avr 5.8
(-1.8) 		10.8
(3) 		7.5
(-0.2) 		7
(-0.7) 		8.4
(0.7) 		4.6
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183224_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16881
Sequence Type Exemplar sequence
Representative Public ID F43C9.3 NCBI
Target Description F43C9.3 /REP_DB=WormBase Gene ID /WP=CE04566 /TR=Q20357 /GB=AAA81467.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076416(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076416 NCBI Caenorhabditis elegans F43C9.3 (F43C9.3) mRNA, complete cds. 11/11 None
SNAP00000037147 ENSEMBL cdna:SNAP chromosome:CEL140:X:4777480:4782301:-1 11/11 None
GENEFINDER00000037155 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4777480:4782265:-1 11/11 None
F43C9.3 ENSEMBL cdna:known chromosome:CEL140:X:4777480:4782265:-1 gene:F43C9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4777480-4782266(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43C9.3
Entrez Gene 185693 Entrez gene
SwissProt Q20357 EMBL-EBI
WormBase CE34561 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16459 myosin inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3774 motor activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81467 Hypothetical protein F43C9.3 [Caenorhabditis elegans] ref|NP_508817.2| F43C9.3 [Caenorhabditis elegans] 0.0
blast CAE68648 Hypothetical protein CBG14542 [Caenorhabditis briggsae] 0.0
blast XP_624098 PREDICTED: similar to ENSANGP00000013148 [Apis mellifera] 3.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR001609 EMBL-EBI Myosin head (motor domain) 7.9E-5
Pfam IPR001609 EMBL-EBI Myosin head (motor domain) 7.9E-5
Sequence
Target Sequence 
>C. ELEGANS:183224_AT
ggatgctggttctgacccatatgacagagggagtgtggttactgattccgggatcagtgt
tggaacaatcaatgaaagcaatcatacagttcatattgtcgatattcctggatacgttcg
ttcgacgcaaaactcgttgaatgaattaattgtgaatgcagcaaacgatattgttcaatg
cacagactcagatatgtctaatgattccctggaatatgcaagagttcacgaaaacggatt
gggttatcagttaaatttgtaccgaagtgtcatggcgagctcgtgtacttcttcgaatag
aataaacggtatttgtgcccggtcacctaccaatagcactcccaaggttttcttccaacg
gcaatacgccattcgtgaaggacggaagcattattttcctcaacggagaagcgtcgtcat
tgattttcaagatccatcaagtggagtcatactgcgagccggtgaaattgtgaaagcgat
cggattctctggagagtgctatttggtggagaacggacgacgagcacgtgccgcgatacc
aatttcgttcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGCTGGTTCTGACCCATATGAC 687 513 1602 Antisense
GAGTGTGGTTACTGATTCCGGGATC 566 401 1632 Antisense
GATATTCCTGGATACGTTCGTTCGA 119 407 1702 Antisense
TGTACCGAAGTGTCATGGCGAGCTC 33 559 1859 Antisense
CGAGCTCGTGTACTTCTTCGAATAG 502 249 1877 Antisense
CAATAGCACTCCCAAGGTTTTCTTC 182 181 1932 Antisense
TTCCAACGGCAATACGCCATTCGTG 337 691 1954 Antisense
GAGTCATACTGCGAGCCGGTGAAAT 595 399 2045 Antisense
GAAAGCGATCGGATTCTCTGGAGAG 523 359 2073 Antisense
GGAGAACGGACGACGAGCACGTGCC 42 519 2109 Antisense
GTGCCGCGATACCAATTTCGTTCAC 682 477 2129 Antisense
Sequence Source Affymetrix Proprietary Database