[Home] | [Total List]

[183223_at] 7TM chemoreceptor, srx family

Description T01C4.3 /REP_DB=WormBase Gene ID /WP=CE12932 /TR=Q94295 /GB=AAB09178.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 11      6grp_cgc > 65      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 28.5
(-1.5)
M 		13.9
(-2.5)
A 		6.4
(-3)
A 		94.5
(3)
P 		88
B 56
(-1)
P 		40.6
(-3)
A 		43.6
(-2.6)
A 		87
(3)
P 		46
C 29.2
(-2.6)
A 		47.9
(-1.8)
A 		18.6
(-3)
A 		165.2
(3)
P 		147
avr 37.9
(-2) 		34.1
(-2.3) 		22.9
(-3) 		115.6
(3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 2.9
(-3)
A 		30.6
(0.7)
A 		46.5
(2.8)
A 		16.1
(-1.2)
A 		47.7
(3)
P 		16.3
(-1.2)
A 		45
B 27.1
(-2.8)
M 		48.9
(1.2)
P 		58.8
(3)
A 		30.2
(-2.2)
A 		46.8
(0.8)
P 		26.1
(-3)
A 		33
C 15.9
(-3)
A 		75.8
(3)
P 		53.1
(0.7)
A 		42.1
(-0.4)
A 		16.9
(-2.9)
A 		38
(-0.8)
A 		60
avr 15.3
(-3) 		51.8
(2.8) 		52.8
(3) 		29.5
(-0.7) 		37.1
(0.5) 		26.8
(-1.2) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 10.4
(1.3)
M 		3
(-2.4)
A 		1.7
(-3)
A 		13.8
(3)
P 		12
B 17.8
(2.5)
P 		10
(-3)
A 		10.1
(-2.9)
A 		18.5
(3)
P 		9
C 9.7
(-2.1)
A 		13.8
(-1)
A 		6.5
(-3)
A 		27.9
(3)
P 		21
avr 12.6
(-0.2) 		8.9
(-1.8) 		6.1
(-3) 		20.1
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 0.5
(-3)
A 		10.9
(1.5)
A 		10.1
(1.1)
A 		4.1
(-1.4)
A 		14.4
(3)
P 		4
(-1.5)
A 		14
B 9.4
(-2.2)
M 		16.3
(1.5)
P 		14.3
(0.4)
A 		8
(-3)
A 		19
(3)
P 		9.7
(-2.1)
A 		11
C 5.9
(-2.9)
A 		23.1
(3)
P 		13.5
(-0.3)
A 		8.5
(-2)
A 		5.5
(-3)
A 		12.7
(-0.5)
A 		18
avr 5.3
(-3) 		16.8
(3) 		12.6
(0.8) 		6.9
(-2.2) 		13
(1) 		8.8
(-1.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183223_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11720
Sequence Type Exemplar sequence
Representative Public ID T01C4.3 NCBI
Target Description T01C4.3 /REP_DB=WormBase Gene ID /WP=CE12932 /TR=Q94295 /GB=AAB09178.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072402(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072402 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-33) (srx-33) mRNA, complete cds. 11/11 None
GENEFINDER00000016311 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7119982:7121488:-1 11/11 None
T01C4.3 ENSEMBL cdna:known chromosome:CEL140:V:7119982:7121488:-1 gene:T01C4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016304 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7119982-7121489(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-33
Ensembl T01C4.3
Entrez Gene 187943 Entrez gene
SwissProt Q94295 EMBL-EBI
WormBase CE12932 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504803 Serpentine Receptor, class X family member (srx-33) [Caenorhabditis elegans] gb|AAB09178.1| Serpentine receptor, class x protein 33 [Caenorhabditis elegans] 1.0E-168
blast NP_504803 Serpentine Receptor, class X family member (srx-33) [Caenorhabditis elegans] gb|AAB09178.1| Serpentine receptor, class x protein 33 [Caenorhabditis elegans] 1.0E-135
blast CAE74807 Hypothetical protein CBG22638 [Caenorhabditis briggsae] 9.0E-45
blast NP_504807 Serpentine Receptor, class X family member (srx-36) [Caenorhabditis elegans] gb|AAB09181.2| Serpentine receptor, class x protein 36 [Caenorhabditis elegans] 3.0E-44
blast CAE74807 Hypothetical protein CBG22638 [Caenorhabditis briggsae] 4.0E-31
blast T32680 hypothetical protein K07C6.13 - Caenorhabditis elegans 3.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504803.1 8 7-29,39-61,74-96,122-144,153-171,176-195,216-238,248-270
T01C4.3 8 7-29,39-61,74-96,122-144,153-171,176-195,216-238,248-270
GENEFINDER00000016311 6 7-29,78-100,109-127,132-151,172-194,204-226
Sequence
Target Sequence 
>C. ELEGANS:183223_AT
aatatccattcacacgcattttctatcttctgtcaatcgatttatcgcagttttctttcc
attttcatacaagaacattttcagcccatgcgcaacaaaaatctatatcactgctattgc
aatattttcttttacaatgatgacaactgttatatttggatttgggtgccgcttggagta
tcgtccagaaacgtgggtttccttttacgatgtcacaattacaatatgcgcctggtacgc
atattacgtagactttttgaaaaacttggttgttgtctttactgatgctattatcgatat
cataactcttctgaaaatccagaaaatgagaaagcaatatcgaaatggaaaacgctccga
gaattacactaagaaggaaaccgattttctaaaacaaactctaggtcaggctctttgcta
tttgatgtgctatacttcctacttgatggttcctgaaatgatgtcaaacagatacgtggc
gttctttatgtcactggttagttgggctatgatagcaatgattgatggtcttctcacaat
agtttata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATCCATTCACACGCATTTTCTA 636 173 276 Antisense
GCATTTTCTATCTTCTGTCAATCGA 148 309 291 Antisense
GCAGTTTTCTTTCCATTTTCATACA 152 313 322 Antisense
ACAAGAACATTTTCAGCCCATGCGC 571 113 344 Antisense
ATTTGGGTGCCGCTTGGAGTATCGT 530 17 435 Antisense
GGGTTTCCTTTTACGATGTCACAAT 276 497 470 Antisense
TGGTTGTTGTCTTTACTGATGCTAT 370 551 542 Antisense
AAACTCTAGGTCAGGCTCTTTGCTA 443 127 671 Antisense
GATGTGCTATACTTCCTACTTGATG 194 409 699 Antisense
TGGCGTTCTTTATGTCACTGGTTAG 457 545 752 Antisense
GATGGTCTTCTCACAATAGTTTATA 58 409 799 Antisense
Sequence Source Affymetrix Proprietary Database