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[183222_at]

Description ZC449.1 /REP_DB=WormBase Gene ID /WP=CE05051 /TR=Q23328 /GB=AAK39382.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 57      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 897
1 2 3 4 range
A 178.6
(-2.6)
A 		868.8
(2.2)
P 		986.3
(3)
P 		117.8
(-3)
A 		869
B 164.4
(-2.7)
A 		970.6
(2.9)
P 		991.2
(3)
P 		125.7
(-3)
A 		866
C 159.4
(-2.8)
A 		864.8
(2)
P 		1015.1
(3)
P 		127.1
(-3)
A 		888
avr 167.5
(-2.7) 		901.4
(2.3) 		997.5
(3) 		123.5
(-3) 		874

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 593
1 2 3 4 5 6 range
A 344.8
(-1.6)
A 		782.3
(3)
P 		581.9
(0.9)
P 		416.5
(-0.9)
P 		340.5
(-1.7)
A 		215.3
(-3)
A 		567
B 257.8
(-2.2)
A 		710.2
(3)
P 		446.2
(-0)
P 		519
(0.8)
P 		275.2
(-2)
A 		189.6
(-3)
A 		521
C 280.8
(-2.7)
A 		770.4
(3)
P 		552.9
(0.5)
P 		482.8
(-0.3)
M 		335.6
(-2)
A 		253.6
(-3)
A 		517
avr 294.5
(-2.2) 		754.3
(3) 		527
(0.4) 		472.8
(-0.2) 		317.1
(-1.9) 		219.5
(-3) 		535
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 337
1 2 3 4 range
A 65
(-1.8)
A 		188.6
(1.3)
P 		257.9
(3)
P 		17.2
(-3)
A 		241
B 52.4
(-2.3)
A 		239.7
(3)
P 		229.7
(2.7)
P 		26.8
(-3)
A 		213
C 52.8
(-2.4)
A 		248.6
(1.1)
P 		353.8
(3)
P 		21.4
(-3)
A 		332
avr 56.7
(-2.2) 		225.6
(1.7) 		280.5
(3) 		21.8
(-3) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 63.6
(-2.7)
A 		278.2
(3)
P 		126.7
(-1)
P 		105.6
(-1.6)
P 		102.7
(-1.7)
A 		52.4
(-3)
A 		226
B 89.7
(-2.3)
A 		236.4
(3)
P 		108.4
(-1.6)
P 		137.5
(-0.6)
P 		111.8
(-1.5)
A 		70.7
(-3)
A 		166
C 104.1
(-2.2)
A 		235.1
(3)
P 		140.7
(-0.8)
P 		97.1
(-2.5)
M 		108.6
(-2.1)
A 		84.9
(-3)
A 		150
avr 85.8
(-2.5) 		249.9
(3) 		125.3
(-1.1) 		113.4
(-1.5) 		107.7
(-1.7) 		69.3
(-3) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183222_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16494
Sequence Type Exemplar sequence
Representative Public ID ZC449.1 NCBI
Target Description ZC449.1 /REP_DB=WormBase Gene ID /WP=CE05051 /TR=Q23328 /GB=AAK39382.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076454(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076454 NCBI Caenorhabditis elegans ZC449.1 (ZC449.1) mRNA, complete cds. 11/11 None
GENEFINDER00000023566 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5024595:5028048:1 11/11 None
SNAP00000023554 ENSEMBL cdna:SNAP chromosome:CEL140:X:5026318:5028048:1 11/11 None
ZC449.1 ENSEMBL cdna:known chromosome:CEL140:X:5024387:5028105:1 gene:ZC449.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5024595-5028049(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC449.1
Entrez Gene 180775 Entrez gene
SwissProt Q23328 EMBL-EBI
WormBase CE05051 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39382 Hypothetical protein ZC449.1 [Caenorhabditis elegans] ref|NP_508855.1| ZC449.1 [Caenorhabditis elegans] 0.0
blast CAE68682 Hypothetical protein CBG14590 [Caenorhabditis briggsae] 0.0
blast AAK39382 Hypothetical protein ZC449.1 [Caenorhabditis elegans] ref|NP_508855.1| ZC449.1 [Caenorhabditis elegans] 1.0E-152
blast CAE68682 Hypothetical protein CBG14590 [Caenorhabditis briggsae] 1.0E-132
blast AAK39384 Hypothetical protein ZC449.2 [Caenorhabditis elegans] ref|NP_508854.2| ZC449.2 [Caenorhabditis elegans] 5.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 2.1E-12
Pfam IPR003014 EMBL-EBI N/apple PAN 5.7E-17
Pfam IPR003014 EMBL-EBI N/apple PAN 1.6E-19
Pfam IPR003014 EMBL-EBI N/apple PAN 5.7E-17
Pfam IPR003014 EMBL-EBI N/apple PAN 1.6E-19
Sequence
Target Sequence 
>C. ELEGANS:183222_AT
gactatcaactgccgctctttaaattatttccctgtggagaaaaagtgtgaactatatgg
aattctcgcagagccacacggttccggaaaacttttggaaaatgagaaagtgatttatgc
agagaaattttgcttgccagaatccccattcgtctgccagaacgacgaaattttcattct
ccacgttcaaaaaactctctcaaaacgtcgccgtataaccacaaaggccgccagctcaat
aaccgactgccttcgaaaatgtctcgagcaagatgattgcagaagctctgtttacatttc
aaattccaagaagtgtgaactgcacaatgttgacgtgtcaactggtgattacgcacgcga
ctctgatcgagaaacggtgctcatcgaaaatggatgtagaaggaaaggtgttactccgaa
aaggaaggatagcccatcactttcgagcatactcgatacttcctcatctgaatctgaatc
ctcgtcgccttcaaatggaggctggtctgaatgcgactataaaattaatggggaaacagt
tcgagtccgtaccaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTATCAACTGCCGCTCTTTAAAT 67 373 789 Antisense
GCAGAGCCACACGGTTCCGGAAAAC 474 293 856 Antisense
AGAAATTTTGCTTGCCAGAATCCCC 247 73 911 Antisense
ACTCTCTCAAAACGTCGCCGTATAA 488 99 982 Antisense
TATAACCACAAAGGCCGCCAGCTCA 237 659 1002 Antisense
AACCGACTGCCTTCGAAAATGTCTC 287 145 1029 Antisense
GTCAACTGGTGATTACGCACGCGAC 604 463 1125 Antisense
TTACGCACGCGACTCTGATCGAGAA 502 681 1137 Antisense
AGGAAGGATAGCCCATCACTTTCGA 703 53 1210 Antisense
TACTCGATACTTCCTCATCTGAATC 271 647 1238 Antisense
GAAACAGTTCGAGTCCGTACCAATG 639 355 1321 Antisense
Sequence Source Affymetrix Proprietary Database