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[183221_at]

Description C46G7.3 /REP_DB=WormBase Gene ID /WP=CE08779 /TR=O02140 /GB=AAB52875.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 3.2
(-2.9)
A 		4.1
(-2.8)
A 		2.9
(-3)
A 		36.8
(3)
A 		34
B 2.7
(-3)
A 		4.2
(3)
A 		3.5
(0.2)
A 		4
(2.2)
A 		2
C 2.9
(-2.6)
A 		3.8
(-1.5)
A 		2.6
(-3)
A 		7.3
(3)
A 		5
avr 2.9
(-3) 		4
(-2.5) 		3
(-3) 		16
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 3
(3)
A 		2.2
(-3)
A 		2.4
(-1.5)
A 		2.5
(-0.8)
A 		2.7
(0.8)
A 		2.8
(1.5)
A 		1
B 2.3
(0.2)
A 		1.8
(-2.1)
A 		2.9
(3)
A 		1.9
(-1.6)
A 		1.6
(-3)
A 		2.4
(0.7)
A 		1
C 2.2
(1)
A 		2.4
(3)
A 		2
(-1)
A 		2.1
(0)
A 		2.4
(3)
A 		1.8
(-3)
A 		1
avr 2.5
(3) 		2.1
(-3) 		2.4
(1.5) 		2.2
(-1.5) 		2.2
(-1.5) 		2.3
(-0) 		0
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.2
(-2.5)
A 		0.9
(-2.9)
A 		0.8
(-3)
A 		5.4
(3)
A 		5
B 0.9
(0)
A 		1
(3)
A 		0.8
(-3)
A 		0.9
(0)
A 		0
C 1
(-1)
A 		1.1
(1)
A 		0.9
(-3)
A 		1.2
(3)
A 		0
avr 1
(-2.3) 		1
(-2.3) 		0.8
(-3) 		2.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.6
(-1)
A 		0.8
(3)
A 		0.5
(-3)
A 		0.6
(-1)
A 		0.8
(3)
A 		0.7
(1)
A 		0
B 0.8
(1.5)
A 		0.6
(-1.5)
A 		0.7
(-0)
A 		0.5
(-3)
A 		0.7
(-0)
A 		0.9
(3)
A 		0
C 0.8
(3)
A 		0.7
(1.5)
A 		0.5
(-1.5)
A 		0.4
(-3)
A 		0.8
(3)
A 		0.6
(-0)
A 		0
avr 0.7
(1) 		0.7
(1) 		0.6
(-1) 		0.5
(-3) 		0.8
(3) 		0.7
(1) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183221_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10849
Sequence Type Exemplar sequence
Representative Public ID C46G7.3 NCBI
Target Description C46G7.3 /REP_DB=WormBase Gene ID /WP=CE08779 /TR=O02140 /GB=AAB52875.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068502(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068502 NCBI Caenorhabditis elegans C46G7.3 (C46G7.3) mRNA, complete cds. 11/11 None
SNAP00000030349 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6006139:6008768:-1 11/11 None
GENEFINDER00000030361 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6006338:6008485:-1 11/11 None
C46G7.3 ENSEMBL cdna:known chromosome:CEL140:IV:6006338:6008485:-1 gene:C46G7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6006343-6008491(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46G7.3
Entrez Gene 183518 Entrez gene
SwissProt O02140 EMBL-EBI
WormBase CE08779 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500903 C46G7.3 [Caenorhabditis elegans] gb|AAB52875.1| Hypothetical protein C46G7.3 [Caenorhabditis elegans] 0.0
blast AAK84515 Hypothetical protein F07B7.6 [Caenorhabditis elegans] ref|NP_505273.1| F07B7.6 [Caenorhabditis elegans] 8.0E-29
blast AAK84515 Hypothetical protein F07B7.6 [Caenorhabditis elegans] ref|NP_505273.1| F07B7.6 [Caenorhabditis elegans] 9.0E-29
blast CAB03949 Hypothetical protein C38D9.3 [Caenorhabditis elegans] ref|NP_507451.1| C38D9.3 [Caenorhabditis elegans] 3.0E-28
Sequence
Target Sequence 
>C. ELEGANS:183221_AT
gagatcccagtgatggcttacaaccaaaaccagggaaatcaaaatagacacaacaacaaa
ggtttcaagactcatacaccagacaatgacagacccaagaacaacaagctttctccaaca
gtgaccgaaggtcaccaaattacaatgtcagaagctctaagagctactctagagcacgat
gggtatgaaacgcattggacgccaggaccaggtccagacttgacaaggcttcaatacaca
tttcccgttaacagacaaatgatggaccgtaactgccaaatttgcggtgtcggacatacc
cttctgagatgcccgcttgcgagcttcgaagtcagacgattcatcgcgaacgacaaccgg
tgcgctgtttgtgcaggtgaaagacactcctcatcgatgtgctactcgacgttgaagtgc
acctactgctccggaagacatcatccagcaggatgtagactgaaggaattttaccgagac
gttcgcaacttcccagcgacagcagacaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATCCCAGTGATGGCTTACAACC 237 397 1600 Antisense
CAACAAGCTTTCTCCAACAGTGACC 564 189 1701 Antisense
GGACCAGGTCCAGACTTGACAAGGC 689 521 1804 Antisense
CAAGGCTTCAATACACATTTCCCGT 690 183 1823 Antisense
ATTTGCGGTGTCGGACATACCCTTC 548 15 1879 Antisense
CCCGCTTGCGAGCTTCGAAGTCAGA 94 261 1911 Antisense
TCATCGCGAACGACAACCGGTGCGC 440 621 1940 Antisense
AGACACTCCTCATCGATGTGCTACT 66 73 1981 Antisense
CGACGTTGAAGTGCACCTACTGCTC 466 251 2006 Antisense
ACTGCTCCGGAAGACATCATCCAGC 88 99 2024 Antisense
AACTTCCCAGCGACAGCAGACAAAC 412 139 2086 Antisense
Sequence Source Affymetrix Proprietary Database