[Home] | [Total List]

[183220_at]

Description C53A3.1 /REP_DB=WormBase Gene ID /WP=CE16941 /TR=O44537 /GB=AAB94162.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 2.3
(-3)
A 		18.1
(-1.5)
A 		6.8
(-2.6)
A 		67.4
(3)
A 		65
B 9.6
(-1.7)
A 		4.3
(-3)
A 		29.1
(3)
A 		17.3
(0.1)
A 		25
C 19.5
(-1.2)
A 		3.3
(-2.9)
A 		2.8
(-3)
A 		57.4
(3)
A 		55
avr 10.5
(-2.7) 		8.6
(-3) 		12.9
(-2.3) 		47.4
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 3.8
(-3)
A 		22.8
(0.9)
A 		12.3
(-1.3)
A 		12.8
(-1.2)
A 		33.1
(3)
A 		13.5
(-1)
A 		29
B 3
(-2.3)
A 		2
(-2.7)
A 		1
(-3)
A 		7.7
(-0.8)
A 		3.9
(-2)
A 		19.3
(3)
A 		18
C 4.9
(-2.2)
A 		2.3
(-2.7)
A 		8.5
(-1.4)
A 		29.9
(3)
A 		0.9
(-3)
A 		4.4
(-2.3)
A 		29
avr 3.9
(-3) 		9
(-0.6) 		7.3
(-1.4) 		16.8
(3) 		12.6
(1) 		12.4
(1) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.8
(-3)
A 		3.9
(-1)
A 		1.8
(-2.3)
A 		9.9
(3)
A 		9
B 3.1
(-0.9)
A 		1.1
(-3)
A 		6.8
(3)
A 		3.7
(-0.3)
A 		6
C 6.5
(0.8)
A 		0.9
(-3)
A 		1
(-2.9)
A 		9.7
(3)
A 		9
avr 3.5
(-1.4) 		2
(-3) 		3.2
(-1.8) 		7.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.7
(-3)
A 		8.1
(1.8)
A 		2.7
(-1.7)
A 		3.2
(-1.4)
A 		10
(3)
A 		3.3
(-1.3)
A 		9
B 1
(-2.3)
A 		0.7
(-2.6)
A 		0.2
(-3)
A 		2
(-1.5)
A 		1.6
(-1.8)
A 		7.2
(3)
A 		7
C 1.8
(-1.4)
A 		0.7
(-2.6)
A 		2.2
(-1)
A 		6
(3)
A 		0.3
(-3)
A 		1.5
(-1.7)
A 		6
avr 1.2
(-3) 		3.2
(1.3) 		1.7
(-1.9) 		3.7
(2.4) 		4
(3) 		4
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183220_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12192
Sequence Type Exemplar sequence
Representative Public ID C53A3.1 NCBI
Target Description C53A3.1 /REP_DB=WormBase Gene ID /WP=CE16941 /TR=O44537 /GB=AAB94162.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072109(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072109 NCBI Caenorhabditis elegans C53A3.1 (C53A3.1) mRNA, complete cds. 11/11 None
C53A3.1 ENSEMBL cdna:known chromosome:CEL140:V:5761386:5762972:-1 gene:C53A3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031232 8/11 Cross Hyb Matching Probes None
GENEFINDER00000031238 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5761385-5762972(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C53A3.1
Entrez Gene 183735 Entrez gene
SwissProt O44537 EMBL-EBI
WormBase CE16941 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504510 C53A3.1 [Caenorhabditis elegans] gb|AAB94162.1| Hypothetical protein C53A3.1 [Caenorhabditis elegans] 1.0E-177
blast CAB04673 Hypothetical protein T02G6.5 [Caenorhabditis elegans] ref|NP_493003.1| T02G6.5 [Caenorhabditis elegans] 3.0E-43
blast CAA21028 Hypothetical protein Y39A1A.16 [Caenorhabditis elegans] ref|NP_499353.1| Y39A1A.16 [Caenorhabditis elegans] 6.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.0E-4
Sequence
Target Sequence 
>C. ELEGANS:183220_AT
ggagtcattctatttgtcaccatagtttctggattgatgaattgaggagactagtcaact
ttcgcacagatccacacacgtactataatttcaattttattccatatgatgaaccaaagc
aacttatgaaagttatgactttcttgaatgaaacactttccattgatcatgtggaaatta
tgatggatcacgataaacttttcggagattacaagtgtattttggaaagtccattgcttc
gaaaatgtaacagtttggagattcttggaagaaacttgcgcctttggacataccaactga
aattattattagaaaagattcaaccaacgcacagattgtcaattgagtgcatgttaagtt
ctcatttcaataaagaacttaccttcaatattccatatttggaacttttcaaccttacac
aactgggacttcatgaagttcagaatatgaattgtgaactgataagactgcgccgcgccg
tacaccacttgaagctaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTCATTCTATTTGTCACCATAG 523 517 398 Antisense
GACTAGTCAACTTTCGCACAGATCC 187 373 446 Antisense
CACAGATCCACACACGTACTATAAT 239 195 462 Antisense
GAAACACTTTCCATTGATCATGTGG 126 357 547 Antisense
TGGAAGAAACTTGCGCCTTTGGACA 228 543 663 Antisense
GATTCAACCAACGCACAGATTGTCA 289 431 714 Antisense
GAGTGCATGTTAAGTTCTCATTTCA 503 401 742 Antisense
GAACTTACCTTCAATATTCCATATT 657 349 772 Antisense
GGAACTTTTCAACCTTACACAACTG 105 525 798 Antisense
TGTGAACTGATAAGACTGCGCCGCG 199 557 850 Antisense
CGCCGTACACCACTTGAAGCTAAAC 496 253 873 Antisense
Sequence Source Affymetrix Proprietary Database